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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatctttattgtttttaacttactgtaggatagttggtctacttatgtgattggatttgtgcctgatttgaagtttacaaattttcaaacag

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 5
GGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatctttattgtttttaacttactgtaggatagttggtctacttatgtgattggatttgtgcctgatttgaagtttacaaattttcaaacag
|| || || ||||||||||| |||||||| || |||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||   | |||  |   || || ||| |  ||     || |     || || |||   | || |   | |    | |||   |    |   || ||
GGAGGACATTTGTCTCATGGATTCATGACACCCAAAAAACGTGTATCAGCCACATCAATTTATTTTGAATCTATGCCTTATCGACTTGATGAATCAACAGgtattttttgttttct-cattaaaattattacagatatatttgctcctttgtgagat--aacttattttttaacccacgttggaa----tcacaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724687|gb|EE100735.1|EE100735
EST:     CACATCAATTTATTTTGAGTCTATGCCTTATCGACTCGATGAATCTACAG                         GTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
genomic: CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatc ... tttcaaacagGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
EST: gi|110403131|gb|EC964343.1|EC964343
EST:     CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAG                         GTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
genomic: CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatc ... tttcaaacagGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
EST: gi|110378905|gb|EC944062.1|EC944062
EST:     CACATCAATTTATTTTGAGTCTATGCCTTATCGACTCGATGAATCTACAG                         GTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
genomic: CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatc ... tttcaaacagGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
EST: gi|71862785|gb|DT011840.1|DT011840
EST:     CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAG                         GTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA
genomic: CACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGgtgttgcatc ... tttcaaacagGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAA