1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGgtatacgctgcaaactcatgatatgcctaagcctaaccttcttttgattttccatgaaaattatatacctgttggatcattttattttatttttgtcgaa...
species | Vitis vinifera |
transcript | Vv03s0091g00820.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTATATCAACG GTAGGGATTATTCACGCTATCATCAAGCTCCAAAGTGATCTACCAAATTTGEST: gi|34543530|gb|CF511762.1|CF511762
genomic: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGgtatacgctg ... tcttcttcagGTAGGGATTATTCATGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTG
EST: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTATATCAACG GTAGGGATTATTCACGCTATCATCAAGCTCCAAAGTGATCTACCAAATTTGEST: gi|71854828|gb|DT003883.1|DT003883
genomic: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGgtatacgctg ... tcttcttcagGTAGGGATTATTCATGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTG
EST: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTATATCAACG GTAGGGATTATTCACGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTG
genomic: TGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGgtatacgctg ... tcttcttcagGTAGGGATTATTCATGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGgtatacgctgcaaactcatgatatgcctaagcctaaccttcttttgattttccatgaaaattatatacctgttggatcattttattttatttttgtcgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa