1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGAGAAGCATCTAAAGCCTGGTCCATGGAATCATAAGCTCAAGCCGTTCTGTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttccttttccttgttgattgatagttgttgacttgttgattatagacacctgtggcaccgattttaagccttaaaaaggtttcttgtgtttccata...
species | Vitis vinifera |
transcript | Vv03s0088g00200.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAG GGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGTGCTCCAATAAGACAGEST: gi|110687960|gb|EE065968.1|EE065968
genomic: GTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttcctt ... gtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGTGCTCCAATAAGACAG
EST: GTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAG GGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGTGCTCCAATAAGACAG
genomic: GTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttcctt ... gtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGTGCTCCAATAAGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAGCATCTAAAGCCTGGTCCATGGAATCATAAGCTCAAGCCGTTCTGTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttccttttccttgttgattgatagttgttgacttgttgattatagacacctgtggcaccgattttaagccttaaaaaggtttcttgtgtttccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaag