Sequence
atgc intronic sequence ATGC exonic sequenceAAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaacttacaattcacaatggctctgtttcaacctgcttttatttattcttgtttttaattagttgagtatgtatatcttttttaatttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G12910.1 (Glycine max), 5'ss of exon 4
AAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaactta-caattcacaatggctctgt--------ttcaacctgcttttat-------ttattcttgtttttaattagttgagtatgtatatcttttttaatttgaag-------------------------
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ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATGgtaaattgaataattttcctttgatctatgatgggattttgacttgatgttttaaactaatgattatggttcctgtatgatcgagtgtttgaag-tttatggattaaatgcgattcttggttttgaaatttgaag
upper sequence: Vv03s0063g02010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G34360.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaact-tacaattca-caatggctctgtttcaacctgct-tttattta----ttcttgtttttaattag---ttgagtatgtatatcttttttaatttgaag----------------------------------------------
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AAATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTGGTTATTGAGAAAGGGACCATGgtaaaatctgtaactgagctacaactttctttcgatccattgtttgtttaggacttcagatttttcagtgaggttctaaagtatatattttcttgaaaaggagagatagctcatgatttgtccctttttgtaattaatctcgtgttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427102|gb|EC993533.1|EC993533EST: TGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATG GACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACA
genomic: TGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaacttac ... taatttgaagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaacttacaattcacaatggctctgtttcaacctgcttttatttattcttgtttttaattagttgagtatgtatatcttttttaatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA