Sequence
atgc intronic sequence ATGC exonic sequenceGATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttactcattcaatcagcaaaaatgaggccatatgcttaatttctaaatatgacaaaccatttactaagttccttttatttaatcatttatgtattgattgtttttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 5'ss of exon 5
GATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttactcattcaatcagcaaaaatgaggccatatgcttaatttctaaatatgacaaaccatttacta-agttccttttatttaatcatttatgtattgattgtttttttacag--------------------------
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GACCTGCCAAATTTAGTTGCAGTAAAAGATGCAGATTTTTCAAATGTGGATGCAGTTTTTTGTTGCTTGCCACATGGTACAACCCAGgttgttcatcctcgacatgccttatctgaatttccttttgttatctgcttaattgtataaagaaacagttatacattctgtcatatgagt-ttaagattttagaaattcttttaagccatatctgattgtaattttttaccag
upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 5
GATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttactcattcaatcagcaaaaatgaggc-catatgcttaatttctaaata--tgacaaaccat--ttactaagttccttttatttaatcatttatgtattgattgtttttttacag------------
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GACCTCCCAAATTTAGTTGCAATAAAAGATGCAGATTTTTCAAATGTTGATGCGGTTTTTTGTTGCTTGCCACATGGAACAACCCAGgttgtctattattgccatgcccttctctgaaattcttcctaccaattcctgaatcatttagaggtcacaattacactattctgcatattggaggaatttttaaagcgatacctgcttgcaatatttttatcag
upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 5
GATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttactcattcaatcagcaaaaatgaggccatatgcttaatttctaaatatgacaaaccatttactaagttccttttatttaa--tcatttatgtattgattgtttttttacag---------
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GACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAGgttctttcttatgtcttttgagttttgtatttccctgagtttgccaagagagcactggttaaagtataccaaatatcaatgcttaaaagttacaagactattccttagattttcatcttgtttccag
upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G01220.1 (Glycine max), 5'ss of exon 4
GATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttact----cattcaatcagcaaaaatgaggccatatgctta---atttctaaatatgacaaaccatttactaagttccttttattta--atcatttatgtattgattgtttt-tttacag
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GACTTGCCAGATTTGATTTCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAGgttctttcttatgtcttttgagttttgtatttacccgagtttgccaagagagtgcttgataaagtatatcaaatatcaa-tgcttaaaagttaagactattccttagattttcgtcttgtttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110729272|gb|EE105384.1|EE105384EST: TTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAG GACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA
genomic: TTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttact ... ttttttacagGACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GATTTACCAGATATGGTTGCTATCAAGGATGCAAAATTTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttactcattcaatcagcaaaaatgaggccatatgcttaatttctaaatatgacaaaccatttactaagttccttttatttaatcatttatgtattgattgtttttttacag
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA