Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctgaatttggtgatggattattcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 4
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctgaatttggtgatggattattcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag
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ATTTCTAAAAGCAAGGAGATTTGACATTGAGAAAGCAAAGCAAATGTGGACTGACATGCTTAAATGGAGGAAGGAGTACGGTACAGATACAATTGTTGAGgt------------tagtgttcttgcttgtgcctataaaacaatttggat---tttg---tttggctataaataatgcctgtaactacatttctctgtag
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g46720.2 (Oryza sativa), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGG--AGgtatcgatatctgatgatttgcctgaatttggtgatggattat-tcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag
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GTTCCTCAAAGCACGGAAATTTGATGTTGAGAAAGCAAAGAGTATGTGGTCAGATATGCTTAAATGGAGAAAGGAATTTGGGGCTGACAATATAGAGgtaaaaggttgcgttgaagaaacatatctaatataaatatgccattctatcatgacacttgtttatcctttctctcag----------------------------
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctga-atttggtga---tggattattcaaaatacttttggcatctggctttgagttaatat-attttctatgcttttgtaaag
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ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgt--cagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaaaacaataatctgaaatcattttgtgt-ttttcatag--
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G157043_T01 (Zea mays), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgata-tctgatgatttgcctgaatttg---gtgatggattattcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag
|||| |||||||||| || ||| ||||||| |||||||| || |||||| | || ||| || ||||||||||| ||||||||||||| || |||||| | || | | | || | || || | ||| ||| | | | | | | | | ||| | || | | | | | || | | ||
GTTCCTGAAAGCAAGAAAATTTAATATTGACAAAGCAAAACATATGTGGTCAGAGATGCTTAGATGGAGGAAGGAATTTGGTGCTGACAATAT---AGAGgtaaagctaattttgtaatataccaaaacatataccccatgatatatgtagtgtgatcatttcttttcg-tttaattttaaaagtctaatctggtcctttag--
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctgaatttg--gtgatggattattcaaaatactttt--ggcatctggctttga--gttaatatattttctatgcttt-tgtaaag------------
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GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTACTGACACTATTATGGAGgtaaatgtagatagaatttggataatatttactataataggttacaagattagcctctgcggtggttggatttgtttgttattgcatcctctgggcttaatgttttgtgtttgcgttag
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgta--------tcgatatctgatgat-ttgcctgaatttggtgatg-gattattcaaaatacttttggcatctggctttgag-ttaatatattttctatgcttttgtaaag
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GTTCCTGAAAGCGAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTACTGACACTATTATGGAGgtaaatgcagatagaatttggataatatttacaagattagcctctgcggtggttggatttgtttgttgttgcatcctctgtgcttaatgttttgtgtttgcgttag-----
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G01220.1 (Glycine max), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgta-------tcgatatctgatg-atttgcctgaatttgg---tgatggatt---attcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag-------
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ATTTTTGAAAGCGAGGAAGTTTGATATTGAAAAGGCAAAGCATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcagttggaatttgggacatttatttggcttctgctttggcaggtttgagtacaaggaacacgacatgcttttcattgattgattggcttacctactgtttcatgttttcatcag
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G01260.1 (Glycine max), 5'ss of exon 3
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgta-------tcgatatctgatg-atttgcctgaatttggtgatggattattcaaaatacttttggcatc---tggctttgagttaatatattttctatgcttttgtaaag------------
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ATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTATGCAGgtaaatgcagttggaatttggggcatttgtttggcttctgccttggcaggtttgag-tacaaggaacatgacatgcttttgcagtgattggttggcttacctactgtttcgtgttttcttcag
upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctgaatttggtgatggattattcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag
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GTTCTTGAAAGCGAGGAAATTTGATGTTGAGAAAGCTAAACAAATGTGGGCTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtat-gctattaaata--------gaagatagtagt-------ttaaaccattgttg---tctgtttttgtaacgttttatttctctcgttag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299808|gb|CB976602.1|CB976602EST: TTTGGTGCTGACACAATTGANGGAG GATTTTGCGTTCAAAGAGTTGAATGAGGTGTTGAAATACTATCCCCATGG
genomic: TTTGGTGCTGACACAATT-TTGGAGgtatcgatat ... ttgttatcagGATTTTGAGTTCAAAGAGTTGAATGAGGTGTTGAAATACTATCCCCATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctgaatttggtgatggattattcaaaatacttttggcatctggctttgagttaatatattttctatgcttttgtaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata