Sequence
atgc intronic sequence ATGC exonic sequenceCAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttggagaattttcttatttgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G365185_T01 (Zea mays), 5'ss of exon 4
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttg-gagaattttcttatttgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga
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CAATCCAAACTCCTTTACCAGTGCAGATACTGCATATGTTCTTGCTTATTCTGTAATCATGCTCAACACTGATGCTCACAATACTATGGTCAAGGATAAGgtaaacaaatgataataagcatatttga-ttcaagatta-gttta--tttatgagattt-ccaatgtgcag------------------------------
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G092586_T01 (Zea mays), 5'ss of exon 4
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttggagaattttcttatttgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga
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CAATCCAAATGCTTTTATTAGTGCAGATACAGCATATGTTCTTGCATATTCTGTGATCTTGCTAAACACTGATGCTCATAATCCAATGGTGAAGAACAAGgtatactt--atgattttattatcatacgggaatgtc-tataaaga-----aatttagttttttaactctatcaaaggtaatctaagttttcttgtgcag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 4
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGg--tgagcttggagaattttct-tatt-tgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttg---tagat-tagttttttaaggggga
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CAACCCTAGTTCTTTTAGCAGTGCAGATACTGCCTACGTTCTAGCTTACTCTGTGATAATGCTTAATACGGATGCTCATAATAACATGGTGAAAGATAAGgtttgaccttgctgaatcttttatattatgtcttaggctcaaccgttagagt-accagctttgtgacattacttgatgtccaatctaggtgtggtttcatt-------
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G00230.1 (Glycine max), 5'ss of exon 5
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGg--tgagcttggagaattttct-tatt-tgtcttctaccccacacttaggcttacaagt------catgcctttgtgcctaatgt--ttgtagattagttttttaaggggga
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CAACCCTAGTTCTTTTAGCAGTGCAGATACTGCCTACGTTCTTGCTTACTCTGTGATAATGCTTAATACAGATGCTCATAATAATATGGTGAAAGATAAGgtttgaccttgctgaatcttttatatgatgtcttaggctcaacagttagagtaccagctttgtgacattacttgatgtccaatctagttgtagtttcgtt------------
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 5'ss of exon 4
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttggagaattttcttatttgtcttctaccccacactta-ggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga----------------------------------------------------------------------------------------------
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CAATCCAAATTCATTCAGCAGTGCTGACACAGCATATGTTCTTGCATACTCTGTAATAATGCTTAACACTGATGCCCACAATATCATGGTTAAAGAGAAGgtttgtcttcttggctgtcacaatt-tattcaatccatgactgatagcttttggagtgtatgggcatgtgttaacttttttggctatttctgtgctcagaaaattgcttttgaaatattctaaattggagatgctttttggtgtaaaggtctttacagtgtatttaacgtctgctttctggtttatgacaatcag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G35380.1 (Arabidopsis thaliana), 5'ss of exon 3
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttggagaattttcttatttgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga-----------------------------------------------------------------------------------------------
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CAACCCTGGTTCTTTTACTAGTGCAGACACTGCTTATGTTCTTGCATACTCTGTGATAATGCTCAACACAGATGCACACAACAACATGGTTAAGGATAAGgtatgcttcctttcttctgatatttatcaagcatatc-tactgagtagaataacttattgccttgaaattcacgtttgatgacatatgaagtgtaacaaatctggtcatttcctctgtttctgatcttgtacatacatgtacagaaatggtctgaatcgttctgatgtttgtgttcaaattcaatgtttgtttag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S264_74V6.1 (Physcomitrella patens), 5'ss of exon 5
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagc---ttggagaattttcttatt-tgtcttctaccccacacttaggcttacaagtca--tgcctttgtgcctaatgtttgtagattagttttttaaggggga
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CAATCCGAAGGCATTCAGCAGTGCAGATACAGCTTACGTTCTTGCTTACTCTGTGATCATGCTCAATACTGATGCTCACAACCCCATGGTCAAGACCAAGgtcagtgatctgttgcaatttcacactgcgttcaagtgtgcatatttttgctctgagttctgctgatcctagacttttacgatatactttggccttttcc------
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagc------ttggagaattttcttatttgtcttctaccccacacttaggcttacaa-gtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga
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CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34545314|gb|CF513546.1|CF513546EST: CTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAG ATGACCAAGGCTGATTTCATCCGGAATAACCGAGGGATTGATGATGGGCA-
genomic: CTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttgg ... ggctatttagATGACCAAGGCTGATTTCATCCGGAATAACCGAGGGATTGATGATGG-CAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagcttggagaattttcttatttgtcttctaccccacacttaggcttacaagtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacccc