Sequence
atgc intronic sequence ATGC exonic sequenceGTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactccttcctttgatttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaatgggatatctctggca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G05980.1 (Glycine max), 5'ss of exon 5
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactccttcctttgatttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaat----gggatatct--ctggca
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GTTCTACTTCTTCATCCTTTCTTATTAGTGCGGTGACAACCTTGTTGATGCTTCCTTGTATAGCCATTGCCATGAGGCTCATGGATATTTCAGGCAGAAGgta--ttcatctccccattacc-attttccattgacttctttatca---aatactaagaaatatgtttaaagagatgggtctagttgttggggtgttttcctatga
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G00220.1 (Glycine max), 5'ss of exon 5
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactccttcctttgatttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgc---ttccatgaagctaatgggatatctctggca
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GTTCTACTTCTTCGTCCTTTCTTATTAGTGCGGTGACAACCTTGTTGATGCTTCCTTGTATAGCCATTGCCATGAGGCTCATGGATATTTCGGGCAGAAGgta-ttcatctccccactacccttttc--tattgacttctttatcaaataataagaaatatgttgttggggtgttttcttatgaaaagattatttctattgca
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G00330.1 (Glycine max), 5'ss of exon 5
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgta-actccttcctttgatttcttat--ttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaatgggatatctctggca
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GTTCTACTTCTGCGTCTTTTCTTATCAGCAGCGTGACAACCTTGTTGATGTTACCCTGTATAGCTGTGGCCATGAGGCTCATGGATATATCTGGCAGAAGgtatgcatctttctcttatcatttattgttggcttctacttaaatggcaagatttgtttcaataggtggatgtatcc-tggagatgattt--tctcatggtca
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G48150.1 (Glycine max), 5'ss of exon 4
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgta-actccttcctttgat--ttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaatgggatatctctggca
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GTTCTACTTCTGCATCTTTTCTTATTAGCAGTGTGACAACCTTGTTGATGTTACCCTGTATAGCTGTGGCCATGAGACTCATGGATATATCTGGCAGAAGgtatgcatctttcatttataagtttttgttggcatctacttaaatagtaagatttgtttcattaggtggatgtatccgggagatgattt---tctcatgggca
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G35300.2 (Arabidopsis thaliana), 5'ss of exon 6
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactccttcctttgatttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaatgggatatctctggca
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GTTCTTCCTCAGCATCCTTACTTATAAGTGCATTGACAACCTTTGTGATGTTACCTGCAATAGCTGTTGCAATGAGGCTCATGGATCTTTCTGGTCGAAGgtgattaaaac-ttaaatttccttt---gttcttacaatacacataaacgaaacaagctaaaatgcgttatgaaatgtcttttattttatatttgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30304821|gb|CB981615.1|CB981615EST: CTTCCTTGCATAGCTGTTGCCTTGAGGCTCATGGATATTTCTGGTAGAAG GAGTCTGCTGCTCAGCACAATCCCTGTCCTGATAGTAGCCCTTGCCATTCT
genomic: CTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactcctt ... ctcattgcagGAGTCTGCTGCTCAGCACAATCCCTGTCCTGATAATAGCCCTTTCCATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCAGCCTCTACATCTCTGCTTATCAGTGCAATCACAACCTTGTTGATGCTTCCTTGCATAGCTGTTGCCATGAGGCTCATGGATATTTCTGGTAGAAGgtaactccttcctttgatttcttatttggttttgacatggttctcgtttgaaaatgtgcaaaatgtctgcttccatgaagctaatgggatatctctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaat