1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAGAGCTAGCAGCCTCACTTTCTATGGCAGCTGCTCGAAGAATAGTTGAAGCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccaccctttttcattattaccttcattgcttgtggttatgtttacagtttatacgttgtgcgtttcaaagctaactacaagaataaagatatgctcggctttactttttctcatag
species | Vitis vinifera |
transcript | Vv03s0038g02510.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349816941|gb|FQ405067.1|FQ405067
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349814439|gb|FQ398879.1|FQ398879
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|294964277|gb|GW838080.1|GW838080
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAAEST: gi|110373782|gb|EC938130.1|EC938130
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAA
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349822402|gb|FQ412666.1|FQ412666
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|30326719|gb|CD009981.1|CD009981
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|110427704|gb|EC994154.1|EC994154
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|71867913|gb|DT016968.1|DT016968
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|110372385|gb|EC936546.1|EC936546
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|71862449|gb|DT011504.1|DT011504
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGEST: gi|349818788|gb|FQ409322.1|FQ409322
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGCGATTGGAGCAGGEST: gi|351017651|gb|FQ436004.1|FQ436004
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|351015327|gb|FQ445611.1|FQ445611
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349817336|gb|FQ405340.1|FQ405340
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|26266758|gb|CA817821.1|CA817821
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349812344|gb|FQ406365.1|FQ406365
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349811070|gb|FQ406058.1|FQ406058
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349817177|gb|FQ405182.1|FQ405182
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGAATGTTGGTGTGATTGGAGCAGGEST: gi|77582892|gb|DV220428.1|DV220428
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|30295744|gb|CB972538.1|CB972538
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTNGNTNTGATTGGAGCAGGEST: gi|349811261|gb|FQ406249.1|FQ406249
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349808457|gb|FQ405601.1|FQ405601
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349819566|gb|FQ413450.1|FQ413450
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349822836|gb|FQ398223.1|FQ398223
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|77581720|gb|DV219804.1|DV219804
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|110376509|gb|EC941574.1|EC941574
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349810282|gb|FQ401728.1|FQ401728
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|32271798|gb|CD720957.1|CD720957
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|26267099|gb|CA818162.1|CA818162
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|29785291|gb|CB342154.2|CB342154
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGACGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349824738|gb|FQ414596.1|FQ414596
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|351028778|gb|FQ433208.1|FQ433208
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|32269541|gb|CD718700.1|CD718700
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGEST: gi|349820992|gb|FQ404245.1|FQ404245
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGCTAGCAGCCTCACTTTCTATGGCAGCTGCTCGAAGAATAGTTGAAGCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccaccctttttcattattaccttcattgcttgtggttatgtttacagtttatacgttgtgcgtttcaaagctaactacaagaataaagatatgctcggctttactttttctcatag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA