Sequence
atgc intronic sequence ATGC exonic sequenceGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgt--ggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg-------------------------------------------------------
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GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaatgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggcc---gacttgctgtttttaaaagaattggttggtt-ggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaat--------tttgtggtagt------gaaagataattttctatttatacaccttttgata---tgattggtttg--gggcagccaaagg-----gtaaggttgag--ttccttg---------------------
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GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaattatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G06670.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctattt---atacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg---------------------
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GGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGGAGgtaatcacact-tcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattggcattaaggttaatatgcaatttttaatttattgtttcatcatgttag
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctattt---atacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg---------------------
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GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacact-tcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatga----ttggtttg---gggcagccaaagggtaaggttgagttccttg------------------------
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GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcat-aagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatt-tatacaccttttgatatgattggtttggggcag--ccaaagggtaaggttgagttccttg
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GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgat-aaaggcagtattaaactactttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca--
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatt-tatacacc-ttttgatatgattggtttggggca-gccaaagggtaaggttgagttccttg
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GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccacttctacttttgtgcttg---
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg
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TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggcatgctttctgggtttgtcaaggagcgtcattggtcttcttcaattttgcag------------------------------------------
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ37641 (Selaginella moellendorffii), 5'ss of exon 4
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg
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TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggcatactttctgagtttgtcaaggagcgtcattggtcttcttcaattttgcag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352764636|gb|FQ469711.1|FQ469711EST: TGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAG GATATTATAATGAACCGAAGTGTTAAAGATGCGCTTGTGGCTGAAGAAAAG
genomic: TGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttgg ... cttgtaacagGATATTATAATGAACCGAAGTGTTAAAGATGCGCTTGTGGCTGAAGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggtaa