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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttcaagttcatgctactggttgtgatttaattttcttttctttttaatctttattgattttgttttctttatgttgtttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00750.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687487|gb|EE064951.1|EE064951
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|30126806|gb|CB912145.1|CB912145
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110698550|gb|EE076176.1|EE076176
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|26262376|gb|CA813439.1|CA813439
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|26262164|gb|CA813227.1|CA813227
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|71856948|gb|DT006003.1|DT006003
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110724233|gb|EE099882.1|EE099882
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110723124|gb|EE100074.1|EE100074
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|294966730|gb|GW837749.1|GW837749
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|71868328|gb|DT017383.1|DT017383
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttcaagttcatgctactggttgtgatttaattttcttttctttttaatctttattgattttgttttctttatgttgtttcag

- - - - - - - TGGTGG