Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagcatcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaacattaccactaagtgagattataatgaaagagggattcttttttgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00220.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 4
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagcatcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaacattaccactaagtgagattataatgaaagagggattcttttttgcag
|||||||||||||||||| || || || ||||||||  ||||||||||||||||||||||||| ||||| ||||| ||  |||| | ||| ||||| ||||||||  |   ||    |||   ||    ||  |||| ||  |    ||    ||    |  | |  |  || |    | | ||| |      ||| |  ||                                           
TAGGTGGGATACATGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagt-tgtccacttgattttgttgagattagttttttgatatacaatggactgcgataaggttagaacctaagactt-catgcaactacctaaatcccta-------------------------------------------

upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 4
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagc-atcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaacattaccactaagtgagattataatgaaagagggattcttttttgcag
|||||||||||| ||||| || || || ||||||||  ||||||||||||||||||||||||| ||||| ||||| ||  |||| | ||| ||||| ||||||||   ||| |   || | |     ||  |||||| ||  | | | | | | | ||  |  | |  |  || |    | | ||| |      ||  |  |||                                          
TAGGTGGGATACGTGGGGAAGATTCGTAGAAAGAAGTACTGCTTATCAACCTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagttgtccacttgatttgctgagattagttttttgatatacaatgaac-tataat--aaggttagaacctaagactt-catgccactagctaagtctctac------------------------------------------

upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 4
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagcatcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaac--attaccactaagtgagattataatgaaagagggattcttttttgcag
 || ||||| |  ||||| || |||| |||||||||| | |||||||| |||||||| ||||| || |||||||| ||  | ||||||||||| ||||||||||   | ||   | | |||  || ||| ||||||| || |   |||  | |      | |||         || ||      ||| | ||  | |   |||     || || |  |  ||                         
GAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttcttg-cttcttc--ttctttgtttttttctgtaggcttaaaaatgctataagagc---------atctacttagactaaagattgagatggattgtttttatgtaatgt-gtag------------------------

upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S235_62V6.2 (Physcomitrella patens), 5'ss of exon 5
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagcatcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagctgaactctgatgtatgcgtgctagacatcaaaacattaccacta-agtgagattataatgaaagagggattcttttttgcag
  | |  ||||| ||| |  ||||||||||| | || |  |||||||| || |||||||||||  | |||||||| |||||||||| || |||||| |||||||| ||  |||  | ||| | | |    |   ||  | ||    ||| |   | || ||   ||     | |||||  |  | |     ||||   ||||     | |||||||||       | |     || | |||  |||
CCGTTTCGATACGTGGAGCCGGTTTGTTGAACGCAGTGTGGCTTATCAGCCGTGGATATGGACATCTGGAAACCATGAGATTGATTATGTCCCTGAAATTgtaagtattgtcatgaaattacttctaaggtcaattgctacagctgtattaa--gttctacctttgg----taatgta-acacgat-----tcaaggtattaatgaaatagtgagattc------atggtttgttttgtttctcag

upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S33_340V6.1 (Physcomitrella patens), 5'ss of exon 4
TAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTgtaagcatcctcaacatattccattttttttttttttatgcaaagttatcatttgatcgacagc-tgaactctgatgtatgcgtgctagacatcaaaacattaccactaagtgagattataatgaaagagggattctttt--ttgcag--------
  | |  || |||||| |  | || |||||| | || || || ||||| || ||||||||||| ||||| ||||||||||||||||||  |||| | || ||||| |   | | |||   |  |  | ||  |    |  | || | || |  | | | ||| | ||     |||  |   |||     |  |  |   |||| | |  | | |      | ||||      |||| | |  |||  |        
CCGTTTTGACACATGGAGCCGATTCGTTGAACGCAGTGCGGCCTATCAGCCATGGATATGGACAACAGGGAACCACGAGATTGATTTTCTCCCTCACATCgtaagta---ttaccatgcactgtcctcttagtcacaacaccaa-tcataacatcaactacaacatgtgtagtgagttccacgtttggcagcttgacggattatctc--attcacggagcagtgaagctcacattcgtgtggttgttgttgttcag