1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCTAAAAGACTCGAGCACTTTTTCTGCCAAAATTGTTCTTCTGAAGATCAAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcattcactgaaatgatgaacaaatttgttttttttttttttttttttttttttcttttttggtttttttgatctagtgtagctgtttttaaatt...
species | Vitis vinifera |
transcript | Vv03s0038g00160.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAG GTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAEST: gi|110389058|gb|EC953869.1|EC953869
genomic: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcatt ... gatatttcagGTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACA
EST: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAG GTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGGEST: gi|110391870|gb|EC956881.1|EC956881
genomic: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcatt ... gatatttcagGTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGG
EST: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAG GTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGGEST: gi|32458903|gb|CD800077.1|CD800077
genomic: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcatt ... gatatttcagGTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGG
EST: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAG GTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGG
genomic: AAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcatt ... gatatttcagGTGGATACAAAACGGCGGCGGAGGTAACTGTATCATACAAACACAAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTAAAAGACTCGAGCACTTTTTCTGCCAAAATTGTTCTTCTGAAGATCAAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGgtacttcattcactgaaatgatgaacaaatttgttttttttttttttttttttttttttcttttttggtttttttgatctagtgtagctgtttttaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa