Sequence
atgc intronic sequence ATGC exonic sequenceGTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G875564_T03 (Zea mays), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat------
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TTCCTCGGTTGGGCGCCCCTGCAAACCTTTCAATCCATTGTTAGGGGAAACCTATGAAGCTGATTACCCTGAAAATGGAATCCGTTTCTTTTCTGAAAAGgtgtattctt-----tgttaaaa-agtcacccctttttcgttgctgttaaatcataagaggtgggcttggtcccctgacaagacaaattaatgggctggcaatatt
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G061099_T01 (Zea mays), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatcta--tgatactcgaatcttttaatttcacc-aacacacacatgtggacatag-catgacatgggtat----atggttat--------------------------------------------------------------------------------------------
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ATCCACAGATTCCCGGCCTTGCAAACCTTTCAATCCATTGCTTGGGGAAACCTATGAAGCTGATTACCCTGAAAAGGGGATCCGTTTTTTCTCTGAAAAGgtcagtttggcacccaacacatataagtttagctaattatcaattattgtttggtcacttaacaaatcattctgaatataggcctgaaagaggaatcactaaaaacatcacgtacaaggatccaccactggagtattactaaaattttattatatatgagaacacacttgactaaatgtttttgtttattcttgcaccag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatctt-ttaatttcaccaacacacacatgtggacatag-catgacatgggtat----atggttat------------------------------------------------------------------------------------------------
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GTCCACAGATTCCCGCCCCTGCAAACCATTTAATCCATTGCTTGGGGAAACCTATGAAGCTGATTACCCTGAAAAGGGGATCCGTTTCTTCTCTGAGAAGgtc---agtttggtat-ccaccacataaat-taatgctcaattattgtttagtcacttaacagactatactgaatataggcctgaaagaggaatcactaagagcatcacgtacatgaatacagcaatggagtattattactaaagttctattatatatgagaacacacctgactaaatgtgcttatttattcttggcaccag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G402653_T03 (Zea mays), 5'ss of exon 4
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat---
|| |||| | ||| ||||||||| ||||| |||||| |||| || || ||||||||||||| ||||| | ||||||||||||||| | || ||||| ||||||| ||| | | |||| | || | | || || ||| | | ||||| | | || |
TTCATCTGTTGCAAGGCCTTGCAAACCATTCAATCCATTGCTAGGAGAGACCTATGAAGCTGATTACCCTGACAGAGGAATTCGTTTTTTTGCAGAAAAGgt---tagttaaagattctttgttcgtcttatgcaagagatggtgttgcaggggcggagcaacgacttgtcggtgtcagctgacactgatgaattctagaaaa
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 6
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgtta----gaacagatcta-tgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
|| ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||| ||||||| || ||||||||||| || | | ||| | | | ||||| | || | | | || ||| | | || | | | | || | || || | || |
ATCATCTGAAGGTCGTCATTGTAAACCCTTTAATCCATTGTTAGGGGAAACTTACGAAGCTGATTTTCCTGACAAAGGAGTTCGTTTCTTTTCTGAGAAGgttagttacttatgatttaatgatgcacagaattggcgagatactaggctgtta--tgctgcagtgtatttaacttgggcta--aagatgtgataacataaatg-
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 6
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgt--tagaacagatctatgatactcgaatcttttaat-ttcaccaacacacaca-tgtggacatagcatgacatgg-gtatatggttat
|| ||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||| |||||||||| |||| | |||| || || ||||||||||| || | | ||| | | |||| || || | | | | || | | ||| | | ||| || || |||
ATCATCTGAAGGTCGTCATTGTAAACCCTTTAATCCATTGTTAGGGGAAACTTACGAAGCTCATTTTCCTGACAAAGAAGTTCGCTTCTTTTCTGAGAAGgttagttccttatgatttaatgatgcagagaattggccaagaaacaggatgttatgctgcagtgtatttaacttgggctaaagatgtgataacatacatg-----
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G41940.1 (Glycine max), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgt--tagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
||| ||||||||||| |||| |||||||| || || || ||||| ||||| || |||||||||| || || ||||||||||| || || || |||||||| || | ||| | | | |||| || | | |||||| | || | || | | | | | | | || | | || |
GTCATCTGAAGGTCGTAATTGTAAACCCTTTAATCCTTTATTAGGAGAAACCTACGAAGCTGATTACCCCGACAAAGGAATTCGCTTCTTTTCCGAGAAGgttagttccttgtgatatattgaagcagaaatacaggattggaatctataaaggctaagaagttataaggtcgaattttactttggatatcttttgggct--
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G03420.2 (Glycine max), 5'ss of exon 7
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgt--tagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
||| ||||||||||| |||| |||||||| || || || ||||| ||||| || |||||||||| || || ||||||||||| || || || |||||||| || | ||| | | | | || || | | |||||| || | || | | | | | | | || | | || |
GTCATCTGAAGGTCGTAATTGTAAACCCTTTAATCCTTTATTAGGAGAAACCTACGAAGCTGATTACCCCGACAAAGGAATTCGCTTCTTTTCCGAGAAGgttagttccttgtgatttaatgaagctgaaatacaggattggaatctaaaaaggctaagaagagataaggtcgaattttagtttggatatcttttgggct--
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G12460.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgt----ccgtagttaaggatgttagaacagatct-atgatactcgaatct-tttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
||| | ||||| || || || ||||| |||||||| ||| | || ||||| ||||||||||| |||||||| || ||||||||||| |||||||||||||| | || || | ||| || | |||| | || | | | || | || || | | ||| || | | || ||| |
TTCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTGCTCGGAGAAACATATGAAGCTGACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGgtaatatcatatataccttttttactgaagtcttgatgagatgaacataaatgtcagttttctaagactgataaatggtcaataaacaaaatcggtgatt------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatctt--ttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
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TTCCACTGAAGGCAGGCATTGTAAGCCCTTCAATCCTTTGCTTGGAGAAACCTATGAAGCCGACTTTCCTGAAAAGGGAATCCGTTTCTTCTCTGAGAAGgtatgtcac-acaaattttaactcaaatttagaatgtgatgaacataattgttagaatctttaccaagactagagaatatcattcttttggt-tataatag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700214|gb|EE077994.1|EE077994EST: CTTATGAAGCTGATTTTCCTGATAAAGGAATTCGCTTTTTCTCTGAGAAG GTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGG
genomic: CTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagtt ... attgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGgtccgtagttaaggatgttagaacagatctatgatactcgaatcttttaatttcaccaacacacacatgtggacatagcatgacatgggtatatggttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacaca