Sequence
atgc intronic sequence ATGC exonic sequenceAAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G44350.1 (Glycine max), 5'ss of exon 4
AAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag-
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-AACAACTTGGCTGCAAAGCAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTGTGTTGGGTTTAATATCAGCTGCTTGTCACATTAGGGGta-tgaattggttatttttgtcagcttgatagttcctaaat-------atggggaaaatcattgcccttta-ttgtgtgaat-gcagg
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G41380.1 (Glycine max), 5'ss of exon 4
AAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag
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AAACAGCTTGGCTGCAAAACAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTGTGTTGGGTTTAATATCAGCTGCTTGCCACATTAGGGgta-tgaattggctatttttgttgtcttgataattcctaaat-------atgttgaaaatcattgcccttta-ttgtgtgagtt-cag
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G00550.1 (Glycine max), 5'ss of exon 3
AAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgta-actagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag
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ATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACATTAGGGgtatgaaagcttataatttttatttttatttacttaatacttgctaaat-atgatgaaaaccgttgcccttta-ttgtgtgagt-gcag
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G62640.2 (Arabidopsis thaliana), 5'ss of exon 5
AAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtttgtttgctt--ggctgtagtaag-gttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag
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AAGGCACTTGGTTGCACAAAGAACCCATTGGCTTATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCATATAAGGGgtaaaagtcaaataagattcaaattcgaataagtaatgaataagttaagtgtatagttcttgtccct---ttctgttttttcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394481|gb|EC959504.1|EC959504EST: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGG GCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
genomic: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtt ... caaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT