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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTCTAGCAAATGATGTCGATAAACGAATTTTTGGGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaaaacactggtttttcacttctctgaatgtctttatcaaaagcaattctgatgaaaatgaatggtggcgcag

Basic information

species Vitis vinifera
transcript Vv02s0154g00090.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110425320|gb|EC991704.1|EC991704
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30255723|gb|CB971855.1|CB971855
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|161715618|gb|FC066788.1|FC066788
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|110689614|gb|EE065992.1|EE065992
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30255793|gb|CB971925.1|CB971925
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30324497|gb|CD007759.1|CD007759
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|110361722|gb|EC925216.1|EC925216
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30252990|gb|CB970541.1|CB970541
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|110370244|gb|EC929199.1|EC929199
EST:     AGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: AGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|45770886|gb|CN006738.1|CN006738
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30253308|gb|CB970859.1|CB970859
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30252906|gb|CB970457.1|CB970457
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         ATCGATCATTCCATAAT
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAAT
EST: gi|32249394|gb|CD715213.1|CD715213
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|34361915|gb|CF403500.1|CF403500
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30251564|gb|CB969297.1|CB969297
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|110707731|gb|EE084468.1|EE084468
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|110375911|gb|EC940940.1|EC940940
EST:     GGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|30253230|gb|CB970781.1|CB970781
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: gi|34361714|gb|CF403299.1|CF403299
EST:     GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG                         GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTCTCTAGCAAATGATGTCGATAAACGAATTTTTGGGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaaaacactggtttttcacttctctgaatgtctttatcaaaagcaattctgatgaaaatgaatggtggcgcag

- - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT