1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGCAATGATGCATGTTTTGAGTAAGCGGAAGAGTAAAACATCCAAGGGAGTGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAgtatgtgcacaatacgttcatcagcgtttgctttgaattctgcattttttttaatgaagtttacaatagtttcatggaatacatccaaggctttatagcc...
species | Vitis vinifera |
transcript | Vv02s0109g00380.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTAGCTCAGCAA ATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTTEST: gi|27586192|gb|CB008887.1|CB008887
genomic: AGCTAGCTCAGCAAgtatgtgcac ... cttgtggcagATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTT
EST: CTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAA ATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTTEST: gi|110410371|gb|EC976052.1|EC976052
genomic: CTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAgtatgtgcac ... cttgtggcagATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTT
EST: TGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAA ATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTTEST: gi|161717360|gb|FC065275.1|FC065275
genomic: TGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAgtatgtgcac ... cttgtggcagATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTT
EST: TGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAA ATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTT
genomic: TGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAgtatgtgcac ... cttgtggcagATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATGATGCATGTTTTGAGTAAGCGGAAGAGTAAAACATCCAAGGGAGTGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAgtatgtgcacaatacgttcatcagcgtttgctttgaattctgcattttttttaatgaagtttacaatagtttcatggaatacatccaaggctttatagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca