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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattggattgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattattatttg...

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 2
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattg-gattgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattattatttg-
 ||||||||||||||||||||||| ||| | |||||  |     | ||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||   ||||     | | | |   | | |  |||  |  |  | |  |  ||| |  ||||  |   |||| | || |    |   | | |||  |   | 
ATTTCATAAAATGGGGAGAGAAAAAGTTCTTCTGATCAACTTGATATTGCCTTTTGGTTATGAGCTATTGATGTGTGACACTGACATGGTTTGGTTGAAGgtacctttctccatttctcaatacaagtttagtttatatttttaagggtgattcatatgctagctt--tgtttttatgaatcatccaaattttaaaaggagc

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 3
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattggat-tgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattatt-atttg-------
 ||||||||||||||||||||||| ||||| ||||||||  |  |  |||||||||| |  |||||  |||||||||| || |||||||||||||| |||||  | |||        || ||| |  || | | |||||  | |  |  | |   |||     ||   |  ||   ||      ||| | |||| | || ||       
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattc-------atttttgcacatgctttcttgag--ccaatttgtttgaattattaggatggttcataggcttggttagattttgattaatgatctgaaagaat

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 4
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattggattgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattatt-atttg-------
 ||||||||||||||||||||||| ||||| ||||||||  |  |  |||||||||| |  |||||  |||||||||| || |||||||||||||| |||||  | |||        || ||  |   | ||||  |||   |  |  | |   |||     || | |  ||   ||      ||| | |||||| || ||       
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattc-------atttttacac-atgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 4
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattggattgttc-ttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattattatttg-
 ||||||||||||||||||||||| ||||| |||||  |     |  ||||||| || || |||||  ||||||||||||| |||||||||||||| |||||  | ||||     | | | |  ||  ||  |||| |  |  | || |  ||| |  ||||  |   |||| | |  |    |   |   |||  |   | 
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATCAACTTGATACTGCCTTTCGGTTACGAGCTGTTGATGTGTGACACTGACATGGTTTGGTTGAAGgtgcttttctccatttctcaatatatgtttagttttaacttttaagtgtgattcatatgctagctt--tgtttttacgaatcatgcaaaatttaaaaagagc

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattgg-attgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattattatttg
 || || |||||||| |||||||| ||||| || |||||| || ||||||||||||| || |||||||| ||||||||||| |||||||| ||| | |||||  |  |  |  |   |||||   | |||| ||     |||| | |  ||||| |||     ||| |  || |  | || |||  |||  | |       
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaattcg-acagattattatcactgttattc----atcacg-ttatcttcctta-----atagactttcttctgataatttatat-gtgacag----