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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgatatccctatcaactagtaaattgttttcatcagtgcttattattaaatatgataaatgccatttgtctgtttcag

Basic information

species Vitis vinifera
transcript Vv02s0033g01110.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g02550.2 (Oryza sativa), 5'ss of exon 7
TCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgatatccctatcaactagtaaattgttttcatcagtgcttatt--attaaatatgataaatgccatttgtctg----tttcag
|| ||| ||| ||||||||| || ||||||||||| |||| ||||||| | ||||| |||||||| || | |||||| |||||||||||||| ||| || ||   || |     |      ||  |||  |||     |  | | | |    |   | |  |||   ||    ||| ||
TCTTTGCGAAGGATGAACCATCCGAACATTGTGAAACTCAAGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATGgtttgt-atttcttaattagacgcttttgatttggcatttgtgacctctgaagtgattgaagttttttctgtttacgtggtgattttag

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G35190.2 (Glycine max), 5'ss of exon 4
TCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgatatccctatcaactagtaaa---ttgttttcatcagtgct---tattattaaatatgataaatgcca---tttgtctgtttcag
|||||  | || ||||| |||||||| ||||||||||| | ||||||  || | |||| |||||||||||||||||| ||||| ||||||||  ||||     |||     |||  ||    ||  ||  |   |||    | | ||| | ||   | |||| ||   ||||  || |  ||
TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgactaaactacttggtagagaagagctgggttggttgatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtag

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G34610.1 (Glycine max), 5'ss of exon 4
TCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgatatccctatcaactagtaaattgtt---ttcatcagtgct---tattattaaatatgataaatgcca---tttgtctgtttcag
|||||  |||| ||||| |||||||| ||||||||||| |  |||||  || | |||| |||||| ||||||||||| ||||| ||||||||  ||||     ||      |||  ||  | |   ||  |   |||    | | ||| | ||   | |||| ||   ||||  || |  ||
TCATTACGAAAAATGAATCACCCAAATATTGTGAAGCTGAAAGAAGTTATTCGAGAAAGTGATATCTTGTACTTTGTTTTTGAGTACATGgtgggtgactaaacttcttggtagagaaaggctaggttggtggatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720107|gb|FC066739.1|FC066739
EST:     GGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG                         GAATGCAACCTTTACCAACTAATGAAAGATCGGTTGAAGCTTTTTTCGGAA
genomic: GGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgata ... tctgtttcagGAATGCAACCTTTACCAACTAATGAAAGATCGGTTGAAGCTTTTTTCGGAA
EST: gi|33404620|gb|CF210247.1|CF210247
EST:     TTTGTACTTTGTGTTTGAATAC-TG                         GAATGCAACCTTTACCAACTAATGAAAGATCGGTTGAAGCTTTTTTCGGAA
genomic: TTTGTACTTTGTGTTTGAATACATGgtatgtgata ... tctgtttcagGAATGCAACCTTTACCAACTAATGAAAGATCGGTTGAAGCTTTTTTCGGAA