Sequence
atgc intronic sequence ATGC exonic sequenceACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaatccactctgcttatccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacaccattaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G34600.1 (Glycine max), 5'ss of exon 5
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaa-aatccactctgcttat-ccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacaccattaaaa-
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ACTTGGAGACTGAATGGATAGAGCAAGATGAACCTGGAGTCTACATCACAATCAGGCAATTAGCTGATGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGgtaaataataatatatcatgcatgttcctagttttgtagtggttcctccacaaaatcatgtgacatgttcctaggaacatgtactt---aatttgatgaaatg
upper sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G35180.1 (Glycine max), 5'ss of exon 3
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaatccactctgcttat-ccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacaccattaaaa--
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ATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGgtaatataataatatcatgcacgttcctagttttgtagtggttccttcacaaaaacacgtgacatgttcctaggaacatgtactt---aatttgatgaaatgg
upper sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G08070.1 (Glycine max), 5'ss of exon 5
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaac-caaaatccactctgcttatccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtct-actatgcttgtaaacaccattaaaa
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AAATGGAGACAGAATGGGTAGAACAAGACGAGCCAGGAGTTTACATTACAATCAGGCAGTTAGCTGATGGAACAAGAGAGCTTAGACGTGTCAGATTCAGgtactatacaatgca-tcttcaaaaacatgttccttgttta-ttgtttttccttcacagggaaatgatcctattatgatgaaatatacacaagaaatgaaag
upper sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G17590.1 (Glycine max), 5'ss of exon 3
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaatccactctgct----tat-ccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacac-cattaaaa
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AAATGGAGACAGAATGGGTAGAACAAGACGAGCCTGGAGTTTACATTACAATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAGgtactatacattgcatcttcaagaacatgtttcttattgctttttcttctcagggaaatgattctatcttaggaacatgtattatgatgaaatatacaca------
upper sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G35600.1 (Arabidopsis thaliana), 5'ss of exon 6
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaatccactctgcttatccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacaccattaaaa
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AAATGCAAGGTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTTACCAGATGGAACTAGAGAACTACGCCGCGTCAGGTTCAGgtaaaccagagaaccgattttttcagcactatcctaatt---tatttggcgattaaccgtaaacctttcga----accgggtttgtacag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378301|gb|EC943425.1|EC943425EST: ATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAG CCGTGAAAGATTTGGTGAGGTCCATGCAAAGACGTGGTGGGAAGAGAATCG
genomic: ATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaa ... atctttacagCCGTGAAAGATTTGGTGAGGTCCATGCAAAGACGTGGTGGGAAGAGAATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGgtaaccaaaatccactctgcttatccttttattctgtttggctgccaagaaagcaaaaaaaaaaattgctagtctactatgcttgtaaacaccattaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaca