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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggtttttcatgttcatcagtgttctttatgatgcactacttcaatttcctgaacaattaatcaattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaag

Basic information

species Vitis vinifera
transcript Vv02s0025g04840.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g03910.1 (Oryza sativa), 5'ss of exon 3
GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggtttttcatgttcatca-gtgttctttatgatgcactacttcaatttcctgaacaattaatcaattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaag
 |||| || ||||| ||||||||||| || ||||| |||||| |||| |||||||| ||  | ||  ||| |||| |||||||||||||||||||| ||| |      | |    |  |   | ||  |    || |  ||  |  ||   | |  ||| |  | |  || | || || |                                                                                
ATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGgtatgttatcatcagttactgtgaatggctcatattctggtattagaaccttgtgttgagt--atcgaccgct--ctgaaaattttag-------------------------------------------------------------------------------

upper sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G04160.1 (Glycine max), 5'ss of exon 4
GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggtttttcatgttcatcagtgttctttatgatgcactac---ttcaatttcctgaacaattaat--caattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaag
 |||| |||||||| |||||||||||||||||||||||||||||||| ||  |||| |||||||| || | |||  |||||||||| ||||||||||    |      |  |   | || ||| |||   | ||    || || |   |   || || ||  | ||| |||| || |  |||   |   | |||                                                                      
ATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagacactggtgccttgtgttttttttttttgagaaattatatttttaactggattttcattttatggctattcttatgttggttattcttatttataag----------------------------------------------------------------------

upper sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 4
GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggtttttcatgttcatcagtgttctttatgatgcactacttca--atttcctgaacaattaat--caattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaag
||||| || |||||||||||||||||||||||||| |||||| |||| ||  |||| |||||||| || | |||  |||||||||| |||||||||| |  |      |      | || |||||       || || |  | |   |   ||  | ||  | |||||||| || || |||   |     |||                                                                      
GTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag----------------------------------------------------------------------

upper sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G11980.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttt-ttcatgttcatcagtgttctttatgatgcactacttcaatttcctgaacaattaatcaattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaag
||||| || ||||| |||||| |||||||||||||||||||||| || || ||||| ||||| || || | |||  | ||||| || |||||||||  | | || |||||| |   |||||| | |  |     |  ||||           ||||  |    ||| | || |||                                                                                     
GTTCCAGGTATTGTATTTGCACGAGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAGTCAGATGGTGAGACTTATGCGGTTCTCACTGAACAGgtatctctatttatgttcgt-gttgttctattttttaacaaagatcaac----------attatacgg--gttgttttggaag------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964687|gb|GW838490.1|GW838490
EST:     TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGC
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGC
EST: gi|26258628|gb|CA809691.1|CA809691
EST:     TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GTTAGGGTCCCTGTTGGAAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
EST: gi|71862348|gb|DT011403.1|DT011403
EST:     TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GCTAGGGTCCCTGTTGGGAAGCGTATCTT
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTT
EST: gi|110391337|gb|EC956303.1|EC956303
EST:     TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
EST: gi|34546915|gb|CF515147.1|CF515147
EST:     TGACCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GCTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
EST: gi|110422883|gb|EC989216.1|EC989216
EST:     TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAG                         GCTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG
genomic: TGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggttttt ... catgtgtaagGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTG