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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCTGTTGTCCTTGTGGGACCCACCGACGGGTGCCTTCATCATGTGGAAACTTTTgtaagtgctctgacacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcag

Basic information

species Vitis vinifera
transcript Vv02s0025g04090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G38410.1 (Glycine max), 5'ss of exon 1
CCCATCTGTTGTCCTTGTGGGACCCACCGACGGGTGCCTTCATCATGTGGAAACTTTTgtaagtgctctga-----cacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcag
|| || |||||||| |||||| |||| || ||| ||||||||||||||||||||||||||||||||| |||     || | || | ||| |||  | | |  |   | || |   || | |||     |||||                      
CCAATATGTTGTCCATGTGGGCCCCAGCGGCGGATGCCTTCATCATGTGGAAACTTTTgtaagtgctttgatgttgcaacattctgtaagtttttaggaaacacaaaactaacaattatgggtga--aattgtttaaccag--------------

upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G09670.1 (Glycine max), 5'ss of exon 5
CCCATCTGTTGTCCTTGTGGGACCCACCGACGGGTGCCTTCATCATGTGGAAACTTTTgtaagtgctctga-----cacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcag
|| || |||||||| |||||  ||||  | ||| |||||||||||||||||||||| |||||||||| |||     || | || | ||| |||  | | |  |   | || |  ||| | |||     |||||     |                
CCAATATGTTGTCCATGTGGACCCCAGAGGCGGATGCCTTCATCATGTGGAAACTTCTgtaagtgctttgatgttgcaacattctgtaagtttttaggaaacacaaaactaaccgttatgggtga--aattgtttaactag--------------

upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G02850.1 (Glycine max), 5'ss of exon 5
CCCATCTGTTGTCCTTGTGGGACCCACCGACGGGTGCCTTCATCATGTGGAAACTTTTgtaagtgctctga-----cacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcag
|| || |||||||| |||||| ||||  |  || |||||||||||||||||||||| |||||||| | |||     || | || | ||| |||  | | |  |   | || |   || | |||     |||||                      
CCAATATGTTGTCCATGTGGGCCCCAGAGGTGGATGCCTTCATCATGTGGAAACTTCTgtaagtgatttgatgttgcaacattctgtaagtttttaggaaacacaaaactaacaattatgggtga--aattgtttaaccag--------------