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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcagatcaccttacattgttggtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag

Basic information

species Vitis vinifera
transcript Vv02s0025g03850.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 8
TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcagatcaccttacattgttggtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||| ||||||||||| || ||||||| | ||||| || ||||||||  |||||||||| ||| ||||| ||||| ||||||||||||||||| ||| ||| ||||   |        ||        ||  |||| |    |    ||  | | ||| |       ||  | |    | ||| |  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAAAACACTGTTCATAGgtgagtcttgttgatcattataacca-catgcctatcttcaagttctgtt--tcaatcatc-------aactttac---tattaatgttctta-aacttattttcctcttgtccaattactggattttactcag

upper sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 5
TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcagatcaccttacattgttggtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||| ||||||||||| || ||||||| | ||||| || ||||||||  |||||||||| ||| ||||| ||||| |||||||| |||||||| ||| ||| ||||   |        ||        ||  |||| |    |    ||  | | | | |       ||  | |    | ||| |  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAGAACACTGTTCATAGgtgagtcttgttgatcattataacccacatgactatcttcaagttctgtt--tcaattatc-------aactttac---tattaatgttctta-aacttattttcctcttgtccaattactggattttactcag

upper sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 5
TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcag----atcaccttacattgttggtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
|| |||| ||||||||||| |||||||| ||||||| || ||||||||  |||||||| | ||| ||||| ||||||||  | || |||||||| ||  ||| |||  |    ||  | ||||  | |   | |     || | |  | | ||  |  |    |    ||    | |||    |  ||||||   |||  ||                                    
TTAAAGAATATGGCCAGTTAGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTCTATTAGGACTTGCGTATTTGCACACCAAGAACACTGTTCACAGgttagtttggtgcatgcctttactctctcactatctccgtctttgattctaatatacgaaagtcttataacatttttcaatcatagtagtcaa--tagcgca------------------------------------

upper sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcagatcacctta--cattgttg-gtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||||||||||| || |||||||| |  || |||| ||  || || ||||||||| | |||||||| ||||||||||| || ||||| ||||| ||| ||| || |||   |   ||  |||| ||  | |   |  |  |     ||| ||||||| |          ||    |||   ||||| |  | ||                                          
TTCAAGAGTATGGACAATTTGGTGAGAATGCCATTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTGTTCATAGgtgaggcagtgaattctatccattcttctgatacctcgttttccttcatccttcattagttggagaattagatgaacatggattttaattttattcag---------------------------------------