Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatgaatgcgggcatcagtttcaggacatctgacttatatatgattatgatctcactgctattatccatggcttcattccactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G01680.1 (Glycine max), 5'ss of exon 7
TTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatg---------aatgcgggcatcagtttcaggaca----tctgacttatatatgattatgatctca-ctgctattatccatggcttcattccactgcag
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TTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACAGTTATTGCTGAGGCCAAACCAGATCAGAAAGCAGAGAAAGTGAAGGACTTGCAGgtacattatttaaaattgtggttctaaaattgtagataatactttaagcaacgtgtcgttcaatcttcatccaatagtaagcgaaattctgattagatgt--
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G32190.1 (Glycine max), 5'ss of exon 6
TTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatga-atgcgggcatcagtttcaggacatctgacttata-tatgattatgatctcact--gctattatccatggcttcattccactgcag--------
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TTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACAGTTATTGCTGAGGCCAAACCAGATCAGAAAGCAGAGAAAGTCAAGGACTTGCAGgtacattatttaaaattgtgcttctaaaattgtagataatactttaagcaacgtgttgttcaatcttcatccaatagtaagcgaaattctgattagatgt
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G37920.1 (Glycine max), 5'ss of exon 2
-------------------------------TTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatg---------aatgcgggcatcagtttcag--gacatctgacttatatatgattatga----tctcactgctattatccatggctt--cattccactgcag-
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AAATTAGGAGCATCATGGTGACTGGGGACAACTGGGGTACTGCCAATCCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAgtagaaggcagagcaagtgaaggatttgcaggtacattatttaaaattgtagacaataatttaaactgaaaggtgaag-gcacatgaatgcaacatgtcgaactatcttatgctataattcagcctttagttgcaag
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatgaatgcgggcatcagtttcaggacatctgacttatatatgattatgatctcactgctattatccatggcttcattccactgcag
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CTGGGGAACAGCAAACTCAATTGCTAGAGAAGTCGGTATCGACTCTGTTATCGCAGAAGCTAAACCTGAGCAAAAAGCAGAGAAAGTCAAGGAATTACAGgtact----tgagtaaaagctccacactaaatgttaaaaagttcacatatatggaattgataaaagcaatgaatatat---attgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719860|gb|FC065772.1|FC065772EST: TTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAG GCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCA
genomic: TTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatgaatgc ... tccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatgaatgcgggcatcagtttcaggacatctgacttatatatgattatgatctcactgctattatccatggcttcattccactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG