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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCCAATGTGGTTTATAAAGGGAAACTTGAGAATCAAAGGCGGATTGCTGTCAAACGTTTTAATAAATCAGCCTGGCCTGATGCCAGGCAATTTTTGgttagtaaatcgttgctctttagctttggtatgtcatgccttattatgaagtttctttgcttcttttttctggtattattgcctgatgcttagtttaaat...

Basic information

species Vitis vinifera
transcript Vv02s0025g03550.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 4
GGCTCCCAATGTGGTTTATAAAGGGAAACTTGAGAATCAAAGGCGGATTGCTGTCAAACGTTTTAATAAATCAGCCTGGCCTGATGCCAGGCAATTTTTGgttagtaaatcgttgctctttagctttggtatgtcatgc---cttattatgaagtttctttgcttcttttttctggtattattgcctgatgcttagtttaaat
|||||| ||||||||||||||||||| |||||| ||||| | ||| |||||||||||||| || || | |   |||||||| || ||   || ||||||||| || |   | |   | |      |    |   |||||    ||  |||      | |||| || |   | | ||  || |||  || |   |  |||  ||
GGCTCCAAATGTGGTTTATAAAGGGAGACTTGATAATCAGATGCGAATTGCTGTCAAACGGTTCAACAGAAATGCCTGGCCAGAAGCGCAGCCATTTTTGgtaagcatg-catcagtttacgtggtgccaacaccatgcagatttgctattttaaatgtttg-ttataagtgccggctttcttgtatgtt-tatgctttttat

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 3
GGCTCCCAATGTGGTTTATAAAGGGAAACTTGAGAATCAAAGGCGGATTGCTGTCAAACGTTTTAATAAATCAGCCTGGCCTGATGCCAGGCAATTTTTGgttagta--aatcg--ttgctctttagctttggtatgtc-atgccttattatgaagtttcttt----gcttcttttttctggtattattgcctgatgcttagtttaaat
|||||| |||||||| ||||||||||||||||| ||||| | ||| |||||||||||||| || || | |   || |||||||| ||    | ||||||||| || |   |||   || |    |  |     |||||  ||    |||| | ||  ||| ||    |  ||  |||||| ||||  ||   || |  |||        
GGCTCCAAATGTGGTCTATAAAGGGAAACTTGATAATCAGATGCGAATTGCTGTCAAACGGTTCAACAGAAATGCTTGGCCTGAAGCGCAACCATTTTTGgtaagcatgcatcagtttacgtggtgccaacactatgtagatttgctattttaaatgttcattatgagtatcagttttcttgtatgttta--tgctttttat-------

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCTCCCAATGTGGTTTATAAAGGGAAACTTGAGAATCAAAGGCGGATTGCTGTCAAACGTTTTAATAAATCAGCCTGGCCTGATGCCAGGCAATTTTTGgttagtaaatcgttgctctttagctttggtatgtcatgcct-tattatgaagtttctttgcttcttttttctggtattattgcctgatgcttagtttaaat
 ||||| ||||| || |||||||| || |||||||||||||| || |||||||||||| | |||||      | | ||||||||| |  | ||||| ||||| |   | |  || |||||| | ||   |   |   || | | || || |      ||     |    | |||  |  | | ||  ||  |   ||||  
AGCTCCTAATGTTGTCTATAAAGGCAAGCTTGAGAATCAAAGACGTATTGCTGTCAAAAGGTTTAACCGGAAATCTTGGCCTGATTCTCGTCAATTCTTGgtaacccatttatttctcttttggttccattgttggagcttctgttctgcaaacaactttagagtcagatttggcttcttggtctagtgtgttaattaag-