Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttattcattgaaccggttgatgattttaagcttagtgcaattttgaatgaccataatgtgctttagtctttttgtgtag

Basic information

species Vitis vinifera
transcript Vv02s0025g03030.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G131723_T01 (Zea mays), 5'ss of exon 2
ATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttattcattgaaccggttgatgattttaagcttagtgcaattttgaatgaccataatgtgctttagtctttttgtgtag
| ||||||||   |||| | ||||  ||||||||| | || || ||||| || ||   |||||||| ||| | |||||||||||| || |||||||||||||||||  |  |   |   ||||  ||| | |  ||||      | ||||     ||||| ||   ||    |||  | |  ||
ACCTTGGATGTAGATGTCGTGGTGATCTTGCAAAAGCACATCGCACATGCATTGATGTTTGGTTTCGTACTAGAGGTTCAAACAAGTGTGAGATATGCCAgtaagtgttctacatagatggttcttgactgtt-gcttcaaatgactttg-----ccatactgattttc---cttactatacag

upper sequence: Vv02s0025g03030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G079343_T03 (Zea mays), 5'ss of exon 1
ATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttattcattgaaccggttgatgattttaagcttagtgcaattttgaatgaccataatgtgctttagtctttttgtgtag
| |||||||||  |||| | ||||  ||||||||| | || || ||||| || ||   |||||||| ||| | |||||||||||| || |||||||||||||||||  |  |   |   ||||  ||| | |  ||||      | ||||    |||||||||   ||    |||  | |  ||
ACCTTGGATGCAGATGTCGTGGTGATCTTGCAAAAGCACATCGCACATGCATTGATTTTTGGTTTCGTACTAGAGGTTCAAACAAGTGTGAGATATGCCAgtaagtattctacatagaaggttcttgactgtt-gcttcaaatgactttg--ccaccataatgattttc---cttactatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351021798|gb|FQ437183.1|FQ437183
EST:     ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCA                         ACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
genomic: ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttatt ... ttttgtgtagACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
EST: gi|110362211|gb|EC925728.1|EC925728
EST:     ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCA                         ACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
genomic: ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttatt ... ttttgtgtagACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
EST: gi|71857563|gb|DT006618.1|DT006618
EST:     ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCA                         ACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
genomic: ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttatt ... ttttgtgtagACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
EST: gi|34548802|gb|CF517034.1|CF517034
EST:     ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCA                         ACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
genomic: ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttatt ... ttttgtgtagACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
EST: gi|110718208|gb|EE094777.1|EE094777
EST:     ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCA                         ACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT
genomic: ATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAgtaagttatt ... ttttgtgtagACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGT