Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaagtcatatgcttttgcttctttcttcattactagtcaatcatagttcttgatcccattcttttaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g03120.1 (Oryza sativa), 5'ss of exon 2
GTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagata---aagtcatatgcttttgcttct--ttcttcattactagtc---aatcatagttcttgatcc--cattcttttaatcag------------
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GTGTTTGATTTCGCGGACAAATACAGGGGATCATACAGCGACTCGCTGAGCTCAGTGGTGTGTCCGTTCTACTGCTCCCACTCC---TACCATgtaagctacgcaacctgcagcacgcagccaccgataatttgttcctagtcttggaccttttctcttgtccctttactcttttcaatacatcacaatatgc
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G141911_T01 (Zea mays), 5'ss of exon 2
GTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaagtcatatgcttttgcttctttcttcattactagtcaatcatagttcttgatccca--ttcttttaatcag----
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GTGTTTGACTTCGCGGACCGGTACAGGGGCTCGTACAGCGACTCGCTCAGCTCCGTGGCCTGCCCGTTCTACTGCTCCTACTCTGGCTACCAGgtaagctttctgtccgtagctttgattctcttgtcgcc-ttcgttggtgtcagcctttcagtacggttttttttcgtcaaccag
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G03470.1 (Glycine max), 5'ss of exon 4
GTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaagtcatatgct-tttgcttctttcttcattactagtc--aatcatagttc-ttgatcccattct--tttaatcag----------------
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GTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCATgtaagacatatataccttcaacttaattattaattaaattatagttagaaacatagcccgttaatatgatttaggatcgaccaatgaataaaataactaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720276|gb|FC070537.1|FC070537EST: CTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT GATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCC
genomic: CTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaa ... ttttaatcagGATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaagtcatatgcttttgcttctttcttcattactagtcaatcatagttcttgatcccattcttttaatcag
- - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTC