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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTCAATTTGGTTATAGCAGATGAGGACTTCCGTAAAGGTTTTAACATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttgggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g02550.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G01650.1 (Glycine max), 5'ss of exon 4
ATCCTTTCAATTTGGTTATAGCAGATGAGGACTTCCGTAAAGGTTTTAACATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttg--ggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcag
||||||||||||||||| | || |||||||||||||| || || ||||||||| ||||||||||  | ||| |||| ||||| ||||| |||||||| |||| || ||    |||| | ||| |   | | |      |||  |    ||       | | || ||  | | |    | |   |   ||    || ||     |  ||
ATCCTTTCAATTTGGTTGTGGCTGATGAGGACTTCCGAAAGGGCTTTAACATTATTTATGACAAGGCCCTTTCAAAGGCTCTTCGCAAGATTTTCAACAAgtgatgcta-atttatgttattgtggttattctagccacttattaatgaatccatttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatag

upper sequence: Vv02s0025g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G50790.1 (Arabidopsis thaliana), 5'ss of exon 4
ATCCTTTCAATTTGGTTATAGCAGATGAGGACTTCCGTAAAGGTTTTAACATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttgggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcag
|||||||  ||||||||||||||||||| || |||| ||| |||||||||| ||||||||||||  |  |  | ||  |||| || | ||| || |  |||||||| |         || || | |   | | | ||   ||||| |||  | |   ||  | ||  ||   |  ||| ||    ||| |                
ATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCATAAGGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAAgtaattgt---------tcgttgtccacatccgtcttatcttcttgccatttag---ttattgtcacatcacta-attcatctttatgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28961249|gb|CB340635.1|CB340635
EST:     ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGGAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: gi|110388876|gb|EC953674.1|EC953674
EST:     AAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: AAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: gi|110373722|gb|EC938021.1|EC938021
EST:     ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: gi|110372983|gb|EC937181.1|EC937181
EST:     ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: gi|28961880|gb|CB340949.1|CB340949
EST:     ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: gi|349825263|gb|FQ417984.1|FQ417984
EST:     ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA                         GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC