Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctcaattcaacaagatcaatcaatctagggagatctcattaagggaacggcatcggattctgatgtgttttgttatctgaatttcacag

Basic information

species Vitis vinifera
transcript Vv02s0025g01720.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g36950.2 (Oryza sativa), 5'ss of exon 4
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca-----------attcaacaagat-caatcaatctagggagatctcatt--aagggaacg-gca-tcggattctgatgtgttttgttatctgaatttcacag------------------------------------
 || ||||| |||| ||| ||  |||| |||||  | ||| ||||| ||||||| ||||| ||||||||||||||| | |||||||| |  ||  | ||||||| | |             |  || ||| |  |||  | ||   | |||  ||| |  ||   |||   || |  |||  |||       ||   | |||||    |                                      
GACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCAGCGTCGCCGAGgtaacttttgttcatccaaacacacagcaaaagacaacaattccttgaagaattcactgcaaattaacatacagtgagatcatgagacaccatgaagtatgaatgatgccagcaagctgagattttcgttgccgtgtgttgttgcag

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G02840.2 (Glycine max), 5'ss of exon 3
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctcaattcaacaagatcaatcaatctagggagatctcattaagggaacggcatcggattctgatgtgttttgttatctgaatttcacag-------------------------
 || |||||||  ||||| ||| |||| |||||||| ||||||||  |||| || |||||||| || ||||||||||| || |||||||||||||| ||||||  | | | ||  |     |  ||  |   |    | || ||||      | |  | |  | |      | |||| || ||||     |  |                          
AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgta--ttttatttttatcttcttgattga---atattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G36700.1 (Glycine max), 5'ss of exon 4
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaa---atctcaattcaac--aagatcaatcaatctagggagatctcattaagggaacggcatcggattctgatgtgttttg-ttatctgaatttcacag----------------
 || |||||||  ||||| ||| |||| || ||||| ||||||||  |||| || |||||||| || ||||||||||| || |||||||||||||| ||||||    || |  ||    |  || ||   ||    | |  |||    | |||    | ||    |  || | || | |  || |   || || |  |                   
AACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttgctgaatattggtcccatttgaaagaagatactaac---atggttcagtgtttttatttttcctggtccactaaactctatccctttttgggtttatag

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S168_104V6.2 (Physcomitrella patens), 5'ss of exon 5
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgta--aatctcaattc---aacaagatcaatcaatctagggag------atctcattaagggaacggcatcggattctgatgtgttttgttatctgaatttcacag
 |   | ||    ||| ||||  | |||||||| ||||||||||| || || ||||||||||| || ||||||||||| ||  ||||   ||| |||||||||  |   | || ||   ||||  | |   |  |      ||      ||||  |  |  ||         || |   |  | | |  |  || | ||       
TATTCGAAAGCAGTGTAAGCCTTTAGAAGAGGACTCATTCAGGCCAGTGCTGCATCACTATGATGGGCCCAAGTTCCGTCTTCAGCTCTCTGTTCCAGAGgtatcatatttaactcttaaacacaaccgtccgcttcgttcagctcggtatcttgtgcaaagagtaatgattgagttgaaaatttatgatagtcagtatc------

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S4_323V6.1 (Physcomitrella patens), 5'ss of exon 4
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatc-tcaattcaacaagat-caatcaatctagggagatctcattaaggg-aacggcatcggat-tctgatgtgttttgttatctgaatt-tcacag
||   | ||    ||| ||||  | ||||||||||| ||||||||||| || ||||||||||| || ||||| ||||| ||  | ||   ||| |||||||||  || | ||  |   |  ||    |  |   |   || |  || || | | |||    | | || | | |   |   | | || | | |  | ||  
CATTCGCAAGCAGTGTAAGCCTTTAGAAGAGGATTCGTTCAGGCCGGTGCTGCATCACTATGATGGACCCAAATTCCGTCTCCAACTCTCTGTTCCAGAGgtagttccttaaacctctagtatatttttgagaaaataagtttgcactaggtgtaacttggtagcatgtgtcagaagacctctcatttcagtcatgactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34364106|gb|CF405691.1|CF405691
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110726776|gb|EE102853.1|EE102853
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|26263150|gb|CA814213.1|CA814213
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGATGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34548215|gb|CF516447.1|CF516447
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110407354|gb|EC972954.1|EC972954
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAACGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|83276477|gb|DV940485.1|DV940485
EST:     TCNATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|28962679|gb|CB341712.1|CB341712
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|29783652|gb|CB349968.2|CB349968
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110406653|gb|EC972233.1|EC972233
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAACGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|22015188|gb|BQ800222.1|BQ800222
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|37184496|gb|CF603850.1|CF603850
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAACGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|83275636|gb|DV939644.1|DV939644
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110725596|gb|EE102277.1|EE102277
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110421725|gb|EC988025.1|EC988025
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAACGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|352777407|gb|FQ474041.1|FQ474041
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|46911115|gb|CN546490.1|CN546490
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|37186440|gb|CF605793.1|CF605793
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAACGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34547922|gb|CF516154.1|CF516154
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34320297|gb|CF373051.1|CF373051
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34546867|gb|CF515099.1|CF515099
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|32244917|gb|CD710736.1|CD710736
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATATTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|30137123|gb|CB922461.1|CB922461
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|32265497|gb|CD716350.1|CD716350
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|30329303|gb|CD012565.1|CD012565
EST:     GGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: GGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|26262984|gb|CA814047.1|CA814047
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGATGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|254914214|gb|GR906315.1|GR906315
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTCCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|352768383|gb|FQ469558.1|FQ469558
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|33407310|gb|CF212937.1|CF212937
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110726023|gb|EE103098.1|EE103098
EST:     TCCATCACTATGACAGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAAAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAAAAAACCCCCTGAAAGGA-CAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|32458755|gb|CD799929.1|CD799929
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|33406561|gb|CF212188.1|CF212188
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|352776555|gb|FQ474857.1|FQ474857
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110369411|gb|EC933570.1|EC933570
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|30132757|gb|CB918096.1|CB918096
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|32272493|gb|CD721652.1|CD721652
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|29783826|gb|CB350276.2|CB350276
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|28965525|gb|CB344558.1|CB344558
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110732396|gb|EE107656.1|EE107656
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34546688|gb|CF514920.1|CF514920
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|34551005|gb|CF519207.1|CF519207
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|45770714|gb|CN006566.1|CN006566
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|32269333|gb|CD718492.1|CD718492
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110376766|gb|EC941841.1|EC941841
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|110725858|gb|EE102801.1|EE102801
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|22012251|gb|BQ797285.1|BQ797285
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
EST: gi|254917278|gb|GR906104.1|GR906104
EST:     TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAG                         GCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA
genomic: TCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctca ... aatttcacagGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGAAGGGAACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctcaattcaacaagatcaatcaatctagggagatctcattaagggaacggcatcggattctgatgtgttttgttatctgaatttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA