Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGCAAATGGAGAGCTGGGTCATGCCATGGAAGCTGTGAAGTGGGGCACTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGgtttgtgcgcctcaacacttttccatatttctttattattctgctcaacttgttgctagcttgacaccgctcacttcctgtgtgtgggcagacttcatac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 2
GGCTGCAAATGGAGAGCTGGGTCATGCCATGGAAGCTGTGAAGTGGGGCACTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGgt------ttgtgc-gcctcaaca-----cttttccatatttctttattattctgctcaacttgttgctagcttgacaccgctcacttcctgtgtgtgggcagacttcatac----------------------------
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GGCTGCTAGTGGTGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAGgtacctttttttgttattttaatagtaaatttgttcggggttattttttattataaatgttttgttcgtagttgaatttag---atgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattag
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 2
GGCTGCAAATGGAGAGCTGGGTCATGCCATGGAAGCTGTGAAGTGGGGCACTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGgt---ttgtgcgcct--caacacttttccatatttctttattattctgctcaactt-gttgctagcttgacaccgctcacttcctgtgtgtgggcagact-tcatac----------------
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GGCTGCTAGTGGTGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttattttcttattttaattttaatacaatgttttattccta-gttgaatttagatgctattacaccaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717038|gb|FC065898.1|FC065898EST: CTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAG GTGGGAGATGGAAACACTGATCACTTCTGTTGGCAAAGGCCAGAGGACATG
genomic: CTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGgtttgtgcgc ... attttggtagGTGGGAGATGGAAACACTGATCACTTCTGTTGGCAAAGGCCAGAGGACATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGCAAATGGAGAGCTGGGTCATGCCATGGAAGCTGTGAAGTGGGGCACTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGgtttgtgcgcctcaacacttttccatatttctttattattctgctcaacttgttgctagcttgacaccgctcacttcctgtgtgtgggcagacttcatac
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