1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGgtgaccattttatctgctttcatttcttaatcttattatgatgcaattcgacttgtaaatatggcaatgatggaaaagttgtgggttggaaagttataaa...
species | Vitis vinifera |
transcript | Vv02s0025g01250.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG GCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTGEST: gi|71873900|gb|DT022955.1|DT022955
genomic: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGgtgaccattt ... ttgttcatagGCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTG
EST: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG GCTGAATTTCAGAATGCTAGTGATTCATTGTCTACGTTTGGGAAGGCTTTGEST: gi|77578329|gb|DV217952.1|DV217952
genomic: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGgtgaccattt ... ttgttcatagGCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTG
EST: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG GCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTG
genomic: AAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGgtgaccattt ... ttgttcatagGCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGgtgaccattttatctgctttcatttcttaatcttattatgatgcaattcgacttgtaaatatggcaatgatggaaaagttgtgggttggaaagttataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa