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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttatttaaagagaatttccaaaactgctggctttatttgcattcattatgtatccatgagttattgcattcaataatccaacataatttaacca...

Basic information

species Vitis vinifera
transcript Vv02s0025g01000.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 4
ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaat-tttatttaaagagaatttccaaaactgctggctttatttgc-attcattatgtatccatgagttattgcattcaataatccaacataatttaacca
|||| |  |||||||||||| |||| || || || || |||||| | |||||||||||||||||||  || |  |||||  || | ||||  | || |||||||| || || | |  |  || ||  ||    |||  |    |||| | |||     |  |  |   |||    || |  ||   |    |  |||     
ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttcatgttataattatatcttaactaactgtttggccttgccaatcagggccttgctttc--ttaccttatgctttacctctttttttttttcttg

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 4
ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaat-tttatttaaagagaatttccaaaactgctggctttatttgcattcattatgtatccatgagttattgcattcaataatccaacataatttaacca
|||| |  |||||||||||| |||| || || || || |||||| | |||||||||||||||||||  |  |  |||||  || | ||||  | || |||||||| || || |    |  || ||  ||    |||  |    |||| ||| |    ||| | | |  | ||   ||   | ||  |  |||||||||   
ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttcatgttgtaattatatcttaactaactgtttggccttgctttcttaccttattctttaccttttttttttcttgattaattataatttaaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724154|gb|EE099733.1|EE099733
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAAATGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|30305484|gb|CB982278.1|CB982278
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|22008693|gb|BQ793727.1|BQ793727
EST:     GTCTATCTTCCACTTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|87584576|gb|DY473692.1|DY473692
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|34543306|gb|CF511538.1|CF511538
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|34416720|gb|CF415474.1|CF415474
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110715183|gb|EE092944.1|EE092944
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|71871411|gb|DT020466.1|DT020466
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAA-TTGTATGTG
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTG
EST: gi|110716107|gb|EE090797.1|EE090797
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGTAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAAT-GTATGTGAAAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110368471|gb|EC932450.1|EC932450
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCACGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110372656|gb|EC936840.1|EC936840
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110702233|gb|EE080709.1|EE080709
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110401740|gb|EC968358.1|EC968358
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|32272492|gb|CD721651.1|CD721651
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTT
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTT
EST: gi|110422908|gb|EC989242.1|EC989242
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110356758|gb|EC919820.1|EC919820
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110389466|gb|EC954304.1|EC954304
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTATG                         GTCTGGAGGTGTGGTGTTGGC
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGC
EST: gi|30304816|gb|CB981610.1|CB981610
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110361925|gb|EC925431.1|EC925431
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110692843|gb|EE068555.1|EE068555
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110428443|gb|EC994915.1|EC994915
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAAAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110379319|gb|EC944505.1|EC944505
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110717153|gb|EE092759.1|EE092759
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110410225|gb|EC975903.1|EC975903
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110416378|gb|EC982357.1|EC982357
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110403040|gb|EC964106.1|EC964106
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110707645|gb|EE084278.1|EE084278
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGGTGT-GGCTTCTCNAGATGGGGAAATTGGATGTGAAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGG-TGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGA
EST: gi|34415214|gb|CF413968.1|CF413968
EST:     CTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGCCCCCTTCTG                         CTCGGGAGGTGTGGTGTTGTCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: CTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110359807|gb|EC921968.1|EC921968
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|71868568|gb|DT017623.1|DT017623
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATNGGAAAAT-GTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110692318|gb|EE071428.1|EE071428
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110396071|gb|EC961746.1|EC961746
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110376657|gb|EC941722.1|EC941722
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGC
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGC
EST: gi|110388165|gb|EC952885.1|EC952885
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110386435|gb|EC951029.1|EC951029
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGC
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGC
EST: gi|110709820|gb|EE085616.1|EE085616
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCCTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGGAGGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110732725|gb|EE108265.1|EE108265
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGGGGTGTTGGCTTCTCGAGATGGGAAAAT-GTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110699974|gb|EE077482.1|EE077482
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAA-TTGTATGTGAGA-
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110373529|gb|EC937773.1|EC937773
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110406384|gb|EC971955.1|EC971955
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110414207|gb|EC980034.1|EC980034
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|110369246|gb|EC933400.1|EC933400
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
EST: gi|34543391|gb|CF511623.1|CF511623
EST:     GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTG                         CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA
genomic: GTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttat ... cactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaattttatttaaagagaatttccaaaactgctggctttatttgcattcattatgtatccatgagttattgcattcaataatccaacataatttaacca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa