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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCATCGCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttgaaataaatgcatattacaaacaacagaaacttatttttttattgtcttttatag

Basic information

species Vitis vinifera
transcript Vv02s0025g00990.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 6
TGGGGCATCGCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttgaaataaatgcatattacaaacaacagaaacttattttt-----ttattgtcttttatag----------------------------
   | ||||    ||  | ||||||    | || | ||| || || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||| ||| ||||   || |       | | | | | | |  |     |  |||||  ||                                
CAAGACATCAAGATCCTTATTTTCTCAGTTACTAAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC206266.3_FGT001 (Zea mays), 5'ss of exon 1
TGGGGCATCGCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttgaaataaatgcatattacaaacaacagaaacttattttt-----ttattgtcttttatag----------------------------
   | ||||    ||  | |||||||   | || | ||| || || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||| ||| ||||   || |       | | | | | | |  |     |  |||||  ||                                
CAAGACATCAAGATCCTTATTTTCTAAGTTACTCAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC234203.1_FGT004 (Zea mays), 5'ss of exon 4
------------------------------------------------------------------------------------TGGGGCATC----GCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttgaaata-aatgcatattacaaacaacagaaacttatttttttattgtcttttatag----------------------------
                                                                                    || |  ||     |  ||    ||  | | ||      | ||| | | |   ||  | | ||||     | ||| |  | || |  | ||    | | | ||   |||  | || || ||| ||   ||  || |   ||       ||    |||   | | |  ||| |                            
TGCGCCAATGTCCTTTTTTGATTCTACCCCTCTTGGAAGGATACTTAGCCGGGTAAGGATACTTAAACAAATTGTTCATATCCCTGAGATATATTGGGTGgtgagattggttttcaacttgcacctcctatatattagttctattgtca----acgaccccccccccccagcaatcgaagtgaatctc-taaactactagacatataaaatatgctagaccaaagttctgttttgcatttggatatttcctattgatggatgaacttgcatttttttatgcag