Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCATCACAATCTATATTTTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttaaaataaatgcttactacaaagaacaaaacacttattttttttattgctttttgtag

Basic information

species Vitis vinifera
transcript Vv02s0025g00970.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 6
TGGGGCATCACAATCTATATTTTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatgctta------ctacaaagaacaaaacacttattttttttattgctttttgtag-------------------------
   | |||||  |||  ||||||||    | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||  |||      ||   |   |   |  | |     |  || |  |||                                
CAAGACATCAAGATCCTTATTTTCTCAGTTACTAAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC206266.3_FGT001 (Zea mays), 5'ss of exon 1
TGGGGCATCACAATCTATATTTTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatgctta------ctacaaagaacaaaacacttattttttttattgctttttgtag-------------------------
   | |||||  |||  |||||||||   | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||  |||      ||   |   |   |  | |     |  || |  |||                                
CAAGACATCAAGATCCTTATTTTCTAAGTTACTCAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00970.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC234203.1_FGT004 (Zea mays), 5'ss of exon 4
-----------------------------------------------------------------------------------------------------------------TGGGGCATCACAATCTATATTTT--CTACACTGCTGA--GCTCTCTTTTTCGAGCA-CCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGG-
                                                                                                                 |       |||   |||||| ||   |  | ||   |   | | |     | ||||  | | ||   | | | |   |  |    |   ||  || ||    |   ||    |  |  |  |  ||  || |||   |      |||    |||||||| |   |          
TGCGCCAATGTCCTTTTTTGATTCTACCCCTCTTGGAAGGATACTTAGCCGGGTAAGGATACTTAAACAAATTGTTCATATCCCTGAGATATATTGGGTGgtgagattggttttcaacttgcacctcctatatattagttctattgtcaacgaccccccccccccagcaatcgaagtgaatctctaaactactagacatataaaatatgctagaccaaagttctgttttgcatttggatatttcctattgatggatgaacttgcatttttttatgcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708945|gb|FC060488.1|FC060488
EST:     CACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGG                         GTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTC
genomic: CACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgct ... ctttttgtagGTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTC