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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttaaaataaatgcatattacaaagaacaaaagacttatttttttattgcctttttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g00930.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 6
TGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatg---catattacaaagaacaaaagacttattttt-ttattgcctttttgcag---------------------------
   | |||||  |||  | || |||    | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||     || |  |  |||   |  || |  |     |  ||| |  ||  ||                            
CAAGACATCAAGATCCTTATTTTCTCAGTTACTAAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC206266.3_FGT001 (Zea mays), 5'ss of exon 1
TGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatg---catattacaaagaacaaaagacttattttt-ttattgcctttttgcag---------------------------
   | |||||  |||  | || ||||   | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||     || |  |  |||   |  || |  |     |  ||| |  ||  ||                            
CAAGACATCAAGATCCTTATTTTCTAAGTTACTCAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00930.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC234203.1_FGT004 (Zea mays), 5'ss of exon 4
-----------------------------------------------------TGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTT---------TTTCGAGCACCAATGT---CCTTTTATGACTCAACACCTCTGGGAAGGATACTC----------AGTCGGgtaagatgcttaaaataa-----atgcatattacaaagaacaaaagacttatttttttattgcctttttgcag-------------------------------
                                                     |  ||   |  || | | ||  || | |   ||||| | | ||           | |     |||  |   |||  |||   | |   |   ||  || ||  | |          | |||      ||   |||| ||      ||  | | ||      || ||||   | ||||    |||  | ||| |                                 
TGCGCCAATGTCCTTTTTTGATTCTACCCCTCTTGGAAGGATACTTAGCCGGGTAAGGATACTTAAACAAATTGTTC-ATATCCCTGAGATATATTGGGTGgtgagattggttttcaacttgcacctcctatatattagttctattgtcaacgaccccccccccccagcaatcgaagtgaatctctaaactactagacatataaaatatgctagaccaaagttctgttttgcatttggatatttcctattgatggatgaacttgcatttttttatgcag