1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGgtaagataatgtcctacaatatttctttttccgtggcttctactaacttcaaagtcatgttccttttgctcatagattcttccttgttttatcagttgtctgcttaagaagttgatatctttcttttttatttattaacag
species | Vitis vinifera |
transcript | Vv02s0025g00070.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCAEST: gi|349826284|gb|FQ416089.1|FQ416089
genomic: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGgtaagataat ... ttattaacagATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCA
EST: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCAEST: gi|71875288|gb|DT024343.1|DT024343
genomic: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGgtaagataat ... ttattaacagATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCA
EST: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCA
genomic: TGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGgtaagataat ... ttattaacagATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGgtaagataatgtcctacaatatttctttttccgtggcttctactaacttcaaagtcatgttccttttgctcatagattcttccttgttttatcagttgtctgcttaagaagttgatatctttcttttttatttattaacag
- - - - - - - - - - - - - - - - - - TTGGAG