1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCATAATGCTGCTCTGAGTGCTCAACCGGCATTAGTTCAGAATGAGAAGAAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaatgatatcattttcacttgtagtttgctaggcaagattcaattatccattcgcagtcaacaagttattgctgaagctaactgagatattgtatcttgcag
species | Vitis vinifera |
transcript | Vv02s0012g02660.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAG CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCACEST: gi|110712232|gb|EE089617.1|EE089617
genomic: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaat ... tatcttgcagCCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCAC
EST: AAGCTACTGGAAAAGATTAAC-TTCTCTGCTTGAGGGAA-TCATCTTCAG CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGEST: gi|110702107|gb|EE080439.1|EE080439
genomic: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaat ... tatcttgcagCCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTG
EST: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAG CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCACEST: gi|351019814|gb|FQ439631.1|FQ439631
genomic: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaat ... tatcttgcagCCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCAC
EST: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAG CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCACEST: gi|110694939|gb|EE072388.1|EE072388
genomic: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaat ... tatcttgcagCCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCAC
EST: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAG CCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCAC
genomic: AAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaat ... tatcttgcagCCGTCCTTCAGAAGATCGTACTATTCCCTTGAACATCATTGCAGAACGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATAATGCTGCTCTGAGTGCTCAACCGGCATTAGTTCAGAATGAGAAGAAGCTACTGGAAAAGATTAACATTCTCTGCTTGATGGAAATCATCTTCAGgtatgttaatgatatcattttcacttgtagtttgctaggcaagattcaattatccattcgcagtcaacaagttattgctgaagctaactgagatattgtatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA