Sequence
atgc intronic sequence ATGC exonic sequenceCAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctttttatgcatgcatgattgggctatggttttcctaaagatagcagttggtagttatcacagttgactgggaaatttaagatgtgaagaaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G01470.1 (Glycine max), 5'ss of exon 5
CAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctttttatgcatgcatgattgggctatggttttcctaaagatagcagttggtagttatcacagttgactgggaaatttaagat-gtgaagaaga----
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TCACTATACCACAGTTCCTAATTATCTGGAACAGAAAAAGACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGCACTAGCACTATATTTAAGCAGgtatggcttttattt-caaatatt-tagatgtatgtttatggtaaatacttccgagacaagcaattat-gttgtttc--aaatcaaaagtagcaaagatgtatga
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G34300.1 (Glycine max), 5'ss of exon 5
CAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctttttatgcatgcatgattgggc-tatggttttcctaaagatagcagttggtagttatcacagttgactgggaaatttaagatgtgaagaaga-----
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TCACTATACCACAGTTCCTAAGTATCTGGAACAGAAAAAAACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGTACTAGCACTATATTTAAGCAGgtatggctttcatttcaa---atatttagacgtatatttatggtaaatacttctgagataagcaatta-agttgtttc--aaatcaaaagtagcaaaaatgtatga
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G31930.3 (Arabidopsis thaliana), 5'ss of exon 5
CAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctttttatgcatgca-tgattgggctatggttttcctaaagatagcagttggtagttatcacagttgactgggaaatttaagatgtgaagaaga
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TAATTATGCTACTGTTCCGAATTATATAGAGCATAAGAAGATTCAGAAGCTTCTACTTCTTGGTATTGAAGGTTCTGGAACTAGCACTATCTTCAAACAGgtaatg---tttaatggatgtaatgtggaaaaaatgaagattcaatggttgcttattgagatttctt---gttgactgaaacag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110376471|gb|EC941535.1|EC941535EST: TTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAG GCCAAATTTTTGTATGGGAACAGGTTTGGTGCTGAAGAATTGCAGGATATT
genomic: TTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctt ... tgctggacagGCCAAATTTTTGTATGGGAACAGGTTTAGTGCTGAAGAATTGCAGGATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGgtacggcctttttatgcatgcatgattgggctatggttttcctaaagatagcagttggtagttatcacagttgactgggaaatttaagatgtgaagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaag