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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCTGCACGTGCAACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttgatgctttacatgcttgtcacttgtgagaaaagaatatgggatcttcaatagtctaatggcccaactgaattgttatgcag

Basic information

species Vitis vinifera
transcript Vv02s0012g02530.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863651|gb|DT012706.1|DT012706
EST:     AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|110707464|gb|EE083889.1|EE083889
EST:     AACACTTGACAAGAATAATAATGATTTTTTACAGACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|27584900|gb|CB007595.1|CB007595
EST:     AACACTTGACAAGAATAATAATGATTTTTTACAGACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|294964885|gb|GW838688.1|GW838688
EST:     AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTCTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT