1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGCCATGTATCTCCACCAAAGTCATCAAGTTTCTTTGCGGAATATGGCATGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagctttacagcccatctttttgcttgtaaatggatgaccaagactaggttatcctactccttgtatatgtagttcaccaagtagatcatatccttgt...
species | Vitis vinifera |
transcript | Vv02s0012g01330.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|71867134|gb|DT016189.1|DT016189
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110405778|gb|EC971328.1|EC971328
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|33410214|gb|CF215841.1|CF215841
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|156736120|gb|EV240241.1|EV240241
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110380236|gb|EC945484.1|EC945484
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|71860448|gb|DT009503.1|DT009503
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAEST: gi|110400199|gb|EC966749.1|EC966749
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTA
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110364414|gb|EC924108.1|EC924108
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|45771808|gb|CN007660.1|CN007660
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|22011758|gb|BQ796792.1|BQ796792
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|30126699|gb|CB912038.1|CB912038
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110702022|gb|EE080258.1|EE080258
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|30128914|gb|CB914253.1|CB914253
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110395731|gb|EC961401.1|EC961401
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGAEST: gi|30127779|gb|CB913118.1|CB913118
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGA
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110702857|gb|EE079196.1|EE079196
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGTGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCEST: gi|110422737|gb|EC989065.1|EC989065
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
EST: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAA ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
genomic: TGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagcttta ... caattatcagATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCATGTATCTCCACCAAAGTCATCAAGTTTCTTTGCGGAATATGGCATGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAgtaagctttacagcccatctttttgcttgtaaatggatgaccaagactaggttatcctactccttgtatatgtagttcaccaagtagatcatatccttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaga