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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatgatgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag

Basic information

species Vitis vinifera
transcript Vv02s0012g01170.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 5'ss of exon 4
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatgatgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag
   |||  |||||||||  ||||| |||||||||| || |||||||||||||| ||| | ||||| |||||||| ||||| ||| |||| || || ||||||    |  | |    ||    | |  ||         |   | |  |  |   || || | ||| ||  |  | |||| ||                                                                              
GCTGATACGGTTAAGTGTGAAGTAGTTGATGGTGGGGAACTGAAATCAAGGCGCCACCTAAATGTCCGTGGAAAGAGTGCGACTTTGCCATCTATTACAGgtcggttgatttctccataacatgttcaac-------ctctagatagttatgcacaagatgctgacatccttctgctttaacag----------------------------------------------------------------------------

upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G144730_T01 (Zea mays), 5'ss of exon 4
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatgatgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag
   |||   || |||||  ||||| |||| || || ||  ||||||||||||| ||| | ||||| |||||||||||||| ||| |||| || || || |||||    ||  || | ||  |  ||||   | |  ||   ||  || |   |||       | | ||| |  |  |   ||                                                                              
GCTGATACAGTCAAGTGTGAAGTAGTTGACGGCGGGGAATTGAAATCAAGGCGCCACCTAAATGTTCGTGGAAAAAGTGCTACTTTGCCATCTATCACTGgttag---ttaatcctctgactggtctagctgctatttagttgcatccaacatcc-------taacatgcttctgttccaacag----------------------------------------------------------------------------

upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G40860.1 (Glycine max), 5'ss of exon 3
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatgatgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag
|| || |||||||| ||  |||| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||| || ||||| ||||| |||    || |||| |                    |||   ||||   | ||| || |    | |  |     || ||  |||| ||  ||  ||||  | |  |||   | |       |  ||   ||  | |   |       | |||  |  ||||
AAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGgtatagttctgttat--------------------attcgttgttgacactttgcatgggtattaagtttcagttattc-acttgtagctggatactctcttagtatgcaagtgcatttgacaattttatgctctgttaccttatgtttcaacttcacag

upper sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G32440.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatga-tgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag
|  |||||||| |||||    || ||||||||||| |||||  |||| || |||||||||||||| || ||||| ||||| ||||| || || || |||||||       |  || |||||||| | ||||  |    |   |   || |||   |  || |   | ||| || || | ||    || |   || ||  |                                                             
AGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCTTCAATCTAGACGTCACTTGAATGTTCGAGGAAAGAGTGCGACTCTTCCATCCATTACAGgttgataccag--ctgatgtttttcc-aatatcttgcatcaaggagct-tttctaataaaatgtttttgagtggttatattctggttttaactccacgcag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025070|gb|FQ433487.1|FQ433487
EST:     GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAG                         ACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
genomic: GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatctttt ... atttcaacagACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
EST: gi|351014767|gb|FQ437967.1|FQ437967
EST:     GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAG                         ACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
genomic: GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatctttt ... atttcaacagACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
EST: gi|351030123|gb|FQ430865.1|FQ430865
EST:     GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAG                         ACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
genomic: GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatctttt ... atttcaacagACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
EST: gi|37184317|gb|CF603671.1|CF603671
EST:     GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAG                         ACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
genomic: GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatctttt ... atttcaacagACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
EST: gi|351027131|gb|FQ439993.1|FQ439993
EST:     GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAG                         ACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT
genomic: GCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatctttt ... atttcaacagACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCT