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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccattttctacttaaaatttaatttacgattaatgctttacctttctcttaatttaaaaacttgaatttgctcattttaattttgttgttgcatttgaacctccgtgtataccag

Basic information

species Vitis vinifera
transcript Vv02s0012g00600.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G04420.1 (Glycine max), 5'ss of exon 4
TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccattttctacttaaaatttaatttacgattaa---tgctttacctttctctt--aatttaaaaacttgaatttgctcattttaattttgttgttgcatttgaacctccgtgtataccag-----------------------------------------------------------
|  ||| |||||| |||||||| |||||||||||||||||||| ||||||||   ||||    | |||||||||||||  ||||||| | |  | || | ||| || | ||||| |  | |||      | ||| ||| || |  || ||   |||||   |||    |  || |  ||    ||| |||| | |   |  | | || |                                                            
TGTTAACGTATGTGCTTCTTCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTA---TATTTTCTGAATCTGATAATAGgtaaac--tcttatgcttgaa-tataattaaaaagtaagatcattctacttttatcatacaacttcttaacttagttttatctacattcaagttagatttggattttatcagacaagaa-actaaaaatatgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcag

upper sequence: Vv02s0012g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G40930.1 (Glycine max), 5'ss of exon 4
TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccattttctacttaaaatttaatttacgattaatgctttacctttctcttaatttaaaaacttga-atttgctcattttaattttgttgttgcatttgaacctccgtgtataccag-----------------------------------------------------
|  ||| |||||| ||||| || |||||||||||||||||||| ||||||||   ||||    | |||||||||||||  ||||||| |    || |   ||| |   | |||| |  | |||     | |   |   | ||||    |  |||| |||   |||  |||  ||||   ||  |||||||         |   | |                                                     
TGTTAACGTATGTGCTTCTGCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTA---TATTTTCTGAATCTGATAATAGgtaaattgttat--gcttgagtctaaattaaaaagtaagatcattcaacttgttaaatt----agtttgatattcattcaagttagatttga-attttatttgaaaagaaactcaagacgggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269253|gb|CD718412.1|CD718412
EST:     TTCTTTGCTGGGTCTGACACTTCTTCTCTCTNTTCTGAATCTGGGAATAG                         CTGGGTGGATGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT
genomic: TTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccatt ... tgtataccagCTGGGTGGACGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT
EST: gi|110706618|gb|EE082302.1|EE082302
EST:     TTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAG                         CTGGGTGGATGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT
genomic: TTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccatt ... tgtataccagCTGGGTGGACGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT
EST: gi|30126226|gb|CB911565.1|CB911565
EST:     TTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAG                         CTGGGTGGATGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT
genomic: TTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccatt ... tgtataccagCTGGGTGGACGCAACCAAATTCTTGACAGGAGCATCAGCTGTTGGGAGCAT