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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgccttccccacccgcccccacccccttttttttcttttcccgaaaaagcatttttgtcatcaaaacacgtcattcatttatttatagcatataacatgtgttggattctgttgtacag

Basic information

species Vitis vinifera
transcript Vv01s0244g00070.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031196|gb|FQ445023.1|FQ445023
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351046750|gb|FQ454360.1|FQ454360
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAG
EST: gi|352798824|gb|FQ478459.1|FQ478459
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|352768718|gb|FQ467930.1|FQ467930
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351024338|gb|FQ423761.1|FQ423761
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351052036|gb|FQ455329.1|FQ455329
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351037721|gb|FQ464162.1|FQ464162
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351036830|gb|FQ459352.1|FQ459352
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351031918|gb|FQ460175.1|FQ460175
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAAAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|349821835|gb|FQ412990.1|FQ412990
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAG
EST: gi|351037441|gb|FQ460640.1|FQ460640
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351047980|gb|FQ441152.1|FQ441152
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|161717169|gb|FC066567.1|FC066567
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: gi|351052469|gb|FQ452502.1|FQ452502
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGA
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGA
EST: gi|351055097|gb|FQ440436.1|FQ440436
EST:     GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG                         CTCAGACTTGAGGAAGGGAGA
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgccttccccacccgcccccacccccttttttttcttttcccgaaaaagcatttttgtcatcaaaacacgtcattcatttatttatagcatataacatgtgttggattctgttgtacag

- - - - - -  AAGAAG
- - - - - - - - AAGAGA