Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatggtgttccatatgatag

Basic information

species Vitis vinifera
transcript Vv01s0150g00500.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 5'ss of exon 3
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatggtgttccatatgatag
||||| ||    ||||  || | |||||||||||||||||| ||||| |||||||| || ||||||||||| || || |||||||| |||||||| || ||||  |   || | |   |   |   | ||      || ||  |||  | |     ||    |  |  |      |||||||| |             
AATGCCGACCAGTACAGCCCCGACGAGCCCATCATCAGCAACGCCTCCTGCACCACCAACTGCCTCGCCCCCTTCGTGAAGATCCTCGACCAGAAGTTCGgtacgtgcgcaca-cgcgcgcatcagcgatcctcgaccaattttactctctctctctctctctgatgcttaaccaatcaatggcgcag----------

upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G039723_T01 (Zea mays), 5'ss of exon 3
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaa-tttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatggtgttccatatgatag
||||| ||    ||||| |||| |||||||||||||||||| ||||| ||||| || || |||| ||  ||||| |||||| |||| ||||| || || |||   |       ||  |||   ||||||  | ||| | ||    ||     |   ||  |||||      | |   |||  |      ||        
AATGCCGACCAGTACAACCCGGACGAGCCCATCATCAGCAACGCCTCCTGCACGACCAACTGCCGCGTGCCATTCGTCAAGGTCCTCGACCAAAAGTTCGgtgcgtgccttcttcgctcaa--actcaaactcaaaccatacgtaacggcgcatgcatactcatcc----gtcaccgtcaccgccaccgcag-------

upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G28240.1 (Glycine max), 5'ss of exon 4
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcatt-catttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaa---tatcaatggtgttccatatgatag-
||||   |    ||||  || |  || |||||||||||||||||||||||||||||||| ||||| || || ||||||||| |||| || |||||||| ||||||    |   |||   |||||  | || || | |||      |  | ||   || | |   ||||| |||||    | |||     |   |  | |||  
AATGAGTATGACTACAGCCCTGATGAACCCATCATCAGCAATGCCTCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGgtaatgtgccttgtcaccacatttttttaagttcattccccatccatcaaat-tgaagcgtg--cttcaaatgaaacaaaacaagtaactagaactttataaa

upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G04940.1 (Glycine max), 5'ss of exon 4
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaa-tggtgttccatatgatag-----
||||   |    ||||  || |  || ||||||||||||||||| |||||||||||||| ||||| || || ||||||||| |||| || |||||||| ||||||    |   |||  ||   ||  | |||   | || ||  |   |   | |  ||| |  || |   |    |||| ||       | | |  |      
AATGAGTATGATTACAGCCCTGATGAACCCATCATCAGCAATGCATCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGgtaatgtgccttgtca--caaccac--atttttttttctctatcaagttgccccatccatgaaattgaagagtgcttcaaatgaaacaaaacaagtaaaatctc

upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G12900.2 (Arabidopsis thaliana), 5'ss of exon 4
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatggtgttccatatgatag
|||||||||   ||||  |  |  ||  | |||||||||||||| ||||| || ||||| || ||||| ||||| |||||| | || |||||||||||||||||  | ||   ||||| |       || | ||||  |   ||     |  |   | |  ||||   ||  | | |     |||||  |  || |||
AATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaag-cgtc---tcattga-------aagtcaaatgttgctatgttgcaatcttgtaaaaatctgagtaatattgtgttgtgtgttaaacttgttag