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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGAGGAAAAGGAGACAGAGAGCAGAGAATCTATCTTTGGTTTGACCCAACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttccttttccctcttttacttcgttggaactcattaatttcagacacagcccaatcaaaccccttccatcagttatctagatctttagagaagga...

Basic information

species Vitis vinifera
transcript Vv01s0150g00460.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008967|gb|BQ794001.1|BQ794001
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110706358|gb|EE081812.1|EE081812
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|71868490|gb|DT017545.1|DT017545
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|27584496|gb|CB007191.1|CB007191
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|349830947|gb|FQ418231.1|FQ418231
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110376917|gb|EC941989.1|EC941989
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110720672|gb|EE096797.1|EE096797
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110689340|gb|EE065480.1|EE065480
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110382728|gb|EC947048.1|EC947048
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110380227|gb|EC945475.1|EC945475
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|77583364|gb|DV220715.1|DV220715
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|71857756|gb|DT006811.1|DT006811
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAAAACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCA
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCA
EST: gi|161716374|gb|FC064899.1|FC064899
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110382654|gb|EC946968.1|EC946968
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|33404113|gb|CF209740.1|CF209740
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|71858567|gb|DT007622.1|DT007622
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCA
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCA
EST: gi|71859446|gb|DT008501.1|DT008501
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAAGATT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAA-GATT
EST: gi|77579321|gb|DV218487.1|DV218487
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|45770468|gb|CN006320.1|CN006320
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|161717282|gb|FC069187.1|FC069187
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|45770313|gb|CN006165.1|CN006165
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|71872727|gb|DT021782.1|DT021782
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|110389435|gb|EC954272.1|EC954272
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTT
EST: gi|71859081|gb|DT008136.1|DT008136
EST:     ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAAT                         ATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAA
genomic: ACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttcct ... tgaaaatcagATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGGAGGAAAAGGAGACAGAGAGCAGAGAATCTATCTTTGGTTTGACCCAACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATgtatgttccttttccctcttttacttcgttggaactcattaatttcagacacagcccaatcaaaccccttccatcagttatctagatctttagagaagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaag