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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAATGATAGAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtagtttccttctacttgatcactgtcatttgttggtatctgctattaggttgccctttggtcagtttgaggtgaaatttgggttggtggttaagtgagtttattctttgcag

Basic information

species Vitis vinifera
transcript Vv01s0137g00580.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709438|gb|EE084898.1|EE084898
EST:     GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCG                         TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
genomic: GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtag ... ttctttgcagTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
EST: gi|110732680|gb|EE108178.1|EE108178
EST:     GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCG                         TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
genomic: GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtag ... ttctttgcagTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
EST: gi|161716341|gb|FC064657.1|FC064657
EST:     GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCG                         TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
genomic: GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtag ... ttctttgcagTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
EST: gi|110698778|gb|EE076668.1|EE076668
EST:     GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCG                         TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
genomic: GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtag ... ttctttgcagTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
EST: gi|110712429|gb|EE090038.1|EE090038
EST:     GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCG                         TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT
genomic: GAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtag ... ttctttgcagTTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAATGATAGAAGTTGAAGTGCTACAGTTGCTTGGAAAATATGATAAAAGTGGCTCTCGgtaagtgtagtttccttctacttgatcactgtcatttgttggtatctgctattaggttgccctttggtcagtttgaggtgaaatttgggttggtggttaagtgagtttattctttgcag

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