1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCAAGATGGTTCGTCCCATCTGGGTACTGTGACATCAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgttttatcttggtatgctcaaatggccagggagacaacacatccatctgtgcgttataatctactttcatttctatctttttaatgattattg...
species | Vitis vinifera |
transcript | Vv01s0127g00270.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCAGAAATAGCAAAG AAGGGCAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|110713701|gb|EE089850.1|EE089850
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAG AAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|34542592|gb|CF510824.1|CF510824
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCAGAAATAGCAAAG AAGGGCAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|71856852|gb|DT005907.1|DT005907
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCAGAAATAGCAAAG AAGGGCAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|352778082|gb|FQ467135.1|FQ467135
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAG AAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|110372621|gb|EC936805.1|EC936805
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCAGAAATAGCAAAG AAGGGCAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|27583546|gb|CB006241.1|CB006241
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCAGAAATAGCAAAG AAGGGCAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTEST: gi|156729691|gb|EV233812.1|EV233812
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
EST: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAG AAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
genomic: CAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgtt ... tccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAAGATGGTTCGTCCCATCTGGGTACTGTGACATCAATGGATCCAAATGAGGGGACTTTTGTGCTACATTCGGAAATAGCAAAGgtaatatgttttatcttggtatgctcaaatggccagggagacaacacatccatctgtgcgttataatctactttcatttctatctttttaatgattattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggaga