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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagattgctctaattttgctactgggtttataattttgtatttcttgggaaggttttggcgctctttaccatgcttggctatgatacatataggt...

Basic information

species Vitis vinifera
transcript Vv01s0026g02490.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860764|gb|DT009819.1|DT009819
EST:     TGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATGG                         CTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
genomic: TGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagat ... cttcatgcagCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
EST: gi|110356657|gb|EC919644.1|EC919644
EST:     TGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATGG                         CTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
genomic: TGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagat ... cttcatgcagCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
EST: gi|161718808|gb|FC066355.1|FC066355
EST:     TGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATGG                         CTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
genomic: TGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagat ... cttcatgcagCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
EST: gi|110359018|gb|EC919806.1|EC919806
EST:     TGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATGG                         CTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
genomic: TGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagat ... cttcatgcagCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
EST: gi|110357251|gb|EC920660.1|EC920660
EST:     TGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATGG                         CTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG
genomic: TGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGgtaagtagat ... cttcatgcagCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAG