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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatatatttaaataattcttacaattttccacctctgtttaagatggtcaatggataactgttgcaaatttttacttgtggatactcatgtcatgttttttctcttgcacacatggcatttttctggtcaagtctgttgttattgatttaacataatccttttttattgtcttatcag

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125948|gb|CB911287.1|CB911287
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|161717886|gb|FC065984.1|FC065984
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|30137104|gb|CB922442.1|CB922442
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|161718575|gb|FC069322.1|FC069322
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGG-T
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|161719703|gb|FC069425.1|FC069425
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|71857008|gb|DT006063.1|DT006063
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|110713393|gb|EE089276.1|EE089276
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
EST: gi|161720924|gb|FC070664.1|FC070664
EST:     TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG                         GCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT
genomic: TGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatata ... gtcttatcagGCAACATAACATCACTTGCAATCCCAGCTGCCACCTTGGGGGCATTGGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTGgtactatatatttaaataattcttacaattttccacctctgtttaagatggtcaatggataactgttgcaaatttttacttgtggatactcatgtcatgttttttctcttgcacacatggcatttttctggtcaagtctgttgttattgatttaacataatccttttttattgtcttatcag

- - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - -  CAGCTC