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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTGGATGGAAGTACATTCATGGTGATGTATTCCGGTACCCAAAGTACAAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatctcatcaagccatcttgtatggagctcggttctacaaatttcttcatatctgctgctaattaatgtaaccttttttcttcaatgcaattccag

Basic information

species Vitis vinifera
transcript Vv01s0011g06540.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716884|gb|FC068118.1|FC068118
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|351031142|gb|FQ444969.1|FQ444969
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|349822988|gb|FQ399967.1|FQ399967
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|110719578|gb|EE094828.1|EE094828
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|161716885|gb|FC068119.1|FC068119
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|351019420|gb|FQ429555.1|FQ429555
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|110729453|gb|EE105418.1|EE105418
EST:     AATCCTTGTTTGCTGCTGNCTCT-GGATCTGGCACCCAGTTATTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAAGTGGGTGTATTTTATCCATACA
genomic: AATCCTTGTTTGCTGCTG-CTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTA-GTGGGTGTATTTTATCCATACA
EST: gi|161706949|gb|FC056818.1|FC056818
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|33402817|gb|CF208444.1|CF208444
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTAGACT                         TACGGTGTTCTTTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
EST: gi|349821254|gb|FQ404386.1|FQ404386
EST:     AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTGTTTACACT                         TACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA
genomic: AAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatct ... gcaattccagTACGGTGTTCATTTTTATACTTGCATTAGTGGGTGTATTTTATCCATACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTGGATGGAAGTACATTCATGGTGATGTATTCCGGTACCCAAAGTACAAATCCTTGTTTGCTGCTGCTCTTGGATCTGGCACCCAGTTATTTACACTgtaagtatctcatcaagccatcttgtatggagctcggttctacaaatttcttcatatctgctgctaattaatgtaaccttttttcttcaatgcaattccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT